Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 273 2e-68 seq2 93.3 4e-14 seq5 89.7 5e-13 >seq4 Length=2550084 Score = 273 bits (302), Expect = 2e-68 Identities = 1188/1855 (64%), Gaps = 50/1855 (3%) Strand=Plus/Minus Query 22144 GGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGA 22203 ||| || || || |||||||| ||||| ||||| | |||||| || || || || Sbjct 817849 GGTACGGAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCT 817790 Query 22204 CGTCAATTTT--CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCG 22261 || ||| || |||| | || | ||||| | |||| |||||| || || Sbjct 817789 GGT-AATCTTGCCCATGG-TGGGGTCTTTCATGTGGATGTTGAGGGACTGAGATTGGTCA 817732 Query 22262 ATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACG 22321 || || || ||||| ||||| ||||| | | | ||| || || ||||| ||| Sbjct 817731 ATGAAGGCGCCTCGGTCGGCAGCCATCTGGACGACCTGGCGCTGGGAAATCTCCCACACG 817672 Query 22322 GTCTTGTACAGTTGCCTGATC-TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTT 22380 |||||||| || |||| | | || || || ||| |||||| ||| |||| Sbjct 817671 GTCTTGTAGAGA-GCCTTAACATCCGCGGGGATGTTGGGGATGTTCTGGATGGAGCCGTC 817613 Query 22381 ATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTT 22440 | ||||| ||||| || | ||| ||| | || ||| | | ||| || Sbjct 817612 TTCAGCAATGATTCTGTTTTTCATAGCATCCGACCATAGGCCCATGTCAACGAGATCCTT 817553 Query 22441 GACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTT 22500 || || |||| || || || |||||||||| | ||| || || ||| ||||| Sbjct 817552 GAGGAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGACGAGAGTAGATGTT 817493 Query 22501 GGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGG 22560 ||||||| | || ||||| | || ||||| ||||| ||||||| || ||| || || Sbjct 817492 GGATGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGATGTACTAGCAGTAGG 817433 Query 22561 CATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGC 22618 ||| || |||| || || ||| | | ||||||| |||| | | ||| |||| Sbjct 817432 CATGGGTGCCAGGAGCAGACTGTTGCGGATACCGTGCTCCTTGACCTGCT-CTCG-GAGC 817375 Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACG 22678 | ||||||||| || ||||| || |||| || |||||| ||| | || | | Sbjct 817374 GGCTCCCAGTCCCAGAGCTCGGAAGGTTTCACGTT---CCACATGTCGAACTGAAGGATA 817318 Query 22679 CCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCG 22738 || | || || ||| | | | || ||| ||||| | | |||||| | | Sbjct 817317 CCTTCAGAGGCAGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCAAGCT-G 817259 Query 22739 CA-GCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGC 22797 || | ||| ||| || ||| ||| |||||||| ||||||| ||||||| || Sbjct 817258 CACGGACGCAGTCAAAGCAGCGTGATAGATAGTCTCAAAGATTTGTTTGTTCAGCTCACG 817199 Query 22798 GGC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCT 22853 || || ||| || | ||||| || | | ||| || || || | ||||| Sbjct 817198 AGCCTCAGGGGAC----TCAAAAGGCATGCGGAGGGCAAGGAAGGCATCAGCAAGACCCT 817143 Query 22854 GAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAA 22909 | || || | |||||| || |||| || || || |||| ||| || | | Sbjct 817142 GGACACCGACACCGATGGGACGGTGGCGCATGTTG----CTGTTGCGAGCCTCAGGAACA 817087 Query 22910 GGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNN 22969 || || || ||| || | |||||| ||| | | ||| | | || | Sbjct 817086 GGGTAATGGTTGACATCAATGATCTTGTTCAGGTTGCGGACGACAGTCTGGGTAACCTCG 817027 Query 22970 NNNNNNNNNTCAAAGTCGTAA-ACGCCCGATTGTA--CAACAAACTTGTTGAC--GGCGA 23024 | ||||| ||| | | ||||| |||| || || | | ||| | Sbjct 817026 TGCAACTTTTGGAAGTCATAACAATCGTTGTTGTAGTCAACGAA--TGAAGGCAGGGCCA 816969 Query 23025 TCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTAC 23084 ||||||||| ||||| ||||| || || || || |||| || | ||||| || | Sbjct 816968 GCGAGGCAAGGTTGCAGACGGCAACTTCATCAGGGGCGCTGTATTCGATGATTTCAGTGC 816909 Query 23085 ATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTG-CACGAA 23143 | || ||| | || ||||| | || |||||||||| || || ||| || || Sbjct 816908 ACAGGTTGGAGCTGCGAATAGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCATGA- 816850 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 |||||||| |||||| | || | || ||||| ||| | || | || || ||| Sbjct 816849 TCCTTGTAAAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCTTCAAGAATAGCGTACCAG 816790 Query 23204 ATAGTCTGAGCGTGAACA--CGT-CG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 | |||| || | | | | || | | |||| ||||||| | ||||| | || Sbjct 816789 AGCTTCTGGGCCTTCATGGTCTTGCGACCCTTACCGGCCTTCT----CATACTTCTCATA 816734 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 ||| || ||||| || | ||||| || ||||| ||||| || | | | || ||||| Sbjct 816733 CAAGGCCTCAAACTCCTCGCCGTAGCAATCGGCAAGGCCAGGGCACTCATTGGGGCACAT 816674 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 |||| |||| || || || || || |||| || ||||| || |||||||| || Sbjct 816673 GAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAACAGATCAGGGATCCATAGCGC 816614 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 | ||||| || ||||| || ||||| || || ||| |||||| | || | || Sbjct 816613 GAGGAACAAATCACGGGCTCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAA 816554 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 || || || || || ||||| ||||| ||||| | ||| || || || |||| ||| || Sbjct 816553 CTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCGGGTCGCTTGTT 816494 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 ||| ||||| || ||||| || || ||||||||| | || | ||||| || || ||| Sbjct 816493 GCCACCCTGGTCCACGTACCGAGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACC 816434 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 ||||| | || || || | ||||| |||| || | ||| |||| Sbjct 816433 ATTGGAGGTACCATTGGTACCGGCAATGTATGAACCGGTTGCGCGGATTCGGTGGACGTT 816374 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 || ||| ||||| || || || || ||||| || || || || ||||||||||| Sbjct 816373 GAGACCGATGCCACCAGCCATCTTGGAGATCATGGCACACGTCTTGAGGGTGTCGTAGAT 816314 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739 ||||| ||||||||||| || | | |||||||| || ||||| | || | | || Sbjct 816313 ACCCTCAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAAGATAGCTGGGGCTGAGG 816254 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTA-TCCATTCGACATTAGAT 23798 ||| | || ||| || || ||| |||||| ||||| | | || | ||||| || | Sbjct 816253 GGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTAAAAAACTTCA-TGGACATGAGGT 816195 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 |||| || |||| | | || ||||| || || ||||| | | ||| ||||| | Sbjct 816194 TGTAGGTCTCGAGGACACGCTCGATGTCATCACCCCAGATACCCACAGAGACACGCATGA 816135 Query 23859 TCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 |||||| || |||| |||||| | ||| | || || | || || || || | || Sbjct 816134 TCATGTGCTGTGGTCGCTCGACAATCTTGCCATCGATCTTAAGGAGGTACGATCGCTCCA 816075 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || || || || | ||||| |||||||| || | || ||||| || Sbjct 816074 GAGTCTTGAAGCCGAAGTACTGGTAGTTGAAGTCACGGTCATAGACGATGGCAGA 816020 >seq2 Length=4202288 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || ||||| || ||||| | || ||||| | ||||||| ||| Sbjct 1893663 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGACACCATCG 1893604 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | || || | || ||||||||| ||| | || || |||||||||||||| | Sbjct 1893603 ACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGA 1893544 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | ||||| || || ||| | || ||| ||| || ||| || |||||||| || | Sbjct 1893543 TTTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATTCAGAAGG 1893484 Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| || || || || || || |||| | || |||| Sbjct 1893483 AATCCACCCTCCACCTTGTCCTGCGACTTCGTGGTGGTA 1893445 >seq5 Length=2272025 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || || || ||||||||| | || || || | Sbjct 1174881 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1174822 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 1174821 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 1174762 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || || ||||| || ||| | || ||| || ||||||| || Sbjct 1174761 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTAC 1174702 Query 31370 AACATTCAAAAAGA 31383 ||||| || || || Sbjct 1174701 AACATCCAGAAGGA 1174688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763647392480