Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq12 118 2e-21 seq4 111 3e-19 >seq12 Length=1358207 Score = 118 bits (130), Expect = 2e-21 Identities = 294/445 (66%), Gaps = 15/445 (3%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 ||||||||||||||||||| || || |||||||| |||||||| || || ||||| |||| Sbjct 114158 TTGTTGCCTTTGCTGCAGTAGAGGGCATCTTCTTCAGTGGTGCTTTTGCTTCCATCTTCT 114217 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | || | |||||||| | |||| ||| || || | || || | | Sbjct 114218 GGCTCAAGAAGCGCGGCCTCATGCCTGGTTTGACCTTCTCAAACGAACTGATCTCCCGTG 114277 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCT----GTTGA--AAAAGGGTTTTGTTG 102089 | || || || || |||||| || ||| |||| | | ||||| || Sbjct 114278 ATGAGGGCCTGCACACCGACTTCGCTTGCCTGCTCCACTCTCACCTTAAGGGCCGTG--- 114334 Query 102090 ATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAG 102149 ||| |||| || ||||| || || |||| || || ||| || || | | Sbjct 114335 -----CCAGCAAG-CAAGTGATTCAGGATATCATCACCGATGCTGTCACTATCGAGAAGG 114388 Query 102150 AATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCC 102209 |||||||||| | | || || | ||| | || ||||||| | | | |||| | Sbjct 114389 AATTTCTCACTGAAGCGCTTCCCTGTGCTTTACTCGGCATGAACTCCGATCTCATGAAGC 114448 Query 102210 AGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATA 102269 | || ||||| || || || ||| || | |||| | || || ||| || | Sbjct 114449 AATATATTGAGTTCGTAGCCGATCGTCTTCTTGTTGCCCTCGGCAATGAGAAGGTGTACA 114508 Query 102270 ATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTT 102329 | ||| ||||||||| || ||||| || ||||| |||| ||||||||||| | Sbjct 114509 AGTCTACGAACCCCTTCGACTTTATGGAAAACATTTCTCTCGGTGGCAAGACCAACTTCT 114568 Query 102330 TTGAAAAGAGAGTCGCCGAGTATCA 102354 | || ||| | |||| || ||||| Sbjct 114569 TCGAGAAGCGTGTCGGTGACTATCA 114593 >seq4 Length=2550084 Score = 111 bits (122), Expect = 3e-19 Identities = 413/641 (64%), Gaps = 10/641 (2%) Strand=Plus/Minus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 |||||| ||||| ||||| |||| |||||| ||||| | | |||| |||||||||||| Sbjct 816748 CTCATACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAATCGGCAAGGCCAGGGCA 816689 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTCCATGAAGAG 94523 ||| | ||||||||| || | ||| | || |||| || | || |||||| || Sbjct 816688 CTCATTGGGGCACATGAGAGTCCAGTCA---CCGTTCTTCTCGACACGCTTCATGAACAG 816632 Query 94524 ATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTACCGGCATT 94583 ||||| | ||| | || |||| | ||| | | | | ||||| || ||| || Sbjct 816631 ATCAGGGATCCATAGCGCGAGGAACAAATCACGGGCTCGGACCTCTTCCTTTCCGTGGTT 816572 Query 94584 CTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAGATGGCTGC 94643 ||| | | ||| | || || || || |||||| || |||||||| Sbjct 816571 CTTGCGGAGGTCGAGGAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAA 816512 Query 94644 AGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTAAAGATTTG 94703 ||| || | ||||| || |||||| || | ||| | ||| |||| | Sbjct 816511 AGCACCGGGTCGCTTGTTGCCACCCTGGTCCACGTACCGAGCAGTGTTGTTGAAGACACG 816452 Query 94704 GAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGAAATGGGGCTTCCTTTTGC 94763 || | | ||| |||| | ||||||| | | |||| || |||| Sbjct 816451 AAGCATGGGGGTGACACCATTGGAGGTACCATTGGTACCGGCAATGTATGAACCGGTTGC 816392 Query 94764 CCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTC 94823 | | || | || || |||| || ||||| |||||||||| || || | Sbjct 816391 GCGGATTCGGTGGACGTTGAGACCGATGCCACCAGCCATCTTGGAGATCATGGCACACGT 816332 Query 94824 CTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGA 94883 ||| || || || || |||||||||||||| || || | | | | | | |||||| || Sbjct 816331 CTTGAGGGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGA 816272 Query 94884 GGAAAGTTGGGG-TGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAAT 94942 || || ||||| || | || ||| || || || |||||||| || ||||||||| Sbjct 816271 AGATAGCTGGGGCTGAG-GGGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTAAAAA 816213 Query 94943 AGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTC-TGATCCGTGAATG 95001 | | | | |||||||| | || || || | |||| | |||||| | | || | || Sbjct 816212 ACTTCATGGACATGAGGTTGTAGGTCTCGAGGACACGCTCGATGTCATCACCCCAG-ATA 816154 Query 95002 CCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 || |||| |||||||| ||||||| ||| || ||||| || Sbjct 816153 CCCACAGAGACACGCATGATCATGTGCTGTGGTCGCTCGAC 816113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989577736551770