Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 127 3e-24 seq12 98.7 1e-15 >seq4 Length=2550084 Score = 127 bits (140), Expect = 3e-24 Identities = 534/832 (64%), Gaps = 26/832 (3%) Strand=Plus/Minus Query 63065 ATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63124 |||||| ||||| ||||| || ||||||| ||| |||||| ||| | ||| || | ||| Sbjct 816850 ATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCTTCAAGAATAGCGTACCA 816791 Query 63125 GACGACTC-GAGCCTTTATTATA----GATTTGTATCTCCTTTCTCTTTCGTATAGAGTA 63179 || | || | ||||| || | || || | | ||||| | | | | | Sbjct 816790 GA-GCTTCTGGGCCTTCATGGTCTTGCGACCCTTACCGGCCTTCTCATACTTCTC----A 816736 Query 63180 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACAC 63239 ||||| || ||||| || || | || | | | | ||| || |||| || ||| Sbjct 816735 TACAAGGCCTCAAACTCCTCGCCGTAGCAATCGGCAAGGCCAGGGCACTCATTGGGGCAC 816676 Query 63240 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63299 || | | ||| || |||| | || || || ||||| || |||||||| ||||| || Sbjct 816675 ATGAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAACAGATCAGGGATCCATAGC 816616 Query 63300 GCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 || | || | ||| | | || || || ||||| ||||| || |||||| Sbjct 816615 GCGAGGAACAAATCACGGGCTCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGG 816556 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419 ||| | | | ||| | ||||| || || | ||| ||||| | | | || || || ||| Sbjct 816555 AACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCGGGTCGCTTG 816496 Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479 || || ||||| || | ||| | ||| ||||| || | || | | ||| || | | | Sbjct 816495 TTGCCACCCTGGTCCACGTACCGAGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACA 816436 Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATT 63539 || || || ||||||||||||||| || || || | || || || | | Sbjct 816435 CCATTGGAGGTACCATTGGTACCGGCAATGTATGAACCGGTTGCGCGGAT-TCGGTGGAC 816377 Query 63540 GAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTGTCAT 63597 | | ||||| || || || ||||| || ||||| | || || ||| || | ||||| | Sbjct 816376 GTTGAGACCGATGCCACCAGCCATCTTGGAGATCATGGCACA-CGTCTTGAGGGTGTCGT 816318 Query 63598 AGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63657 |||| || || ||||| || || |||||| || | || || ||| | ||| | Sbjct 816317 AGATACCCTCAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAAGATAGCTGGGGCT 816258 Query 63658 GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 63717 ||| || || || || || | ||| || || ||||| ||||| | || || | | Sbjct 816257 GAGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTAAAAAACTTCATGGACATGA 816198 Query 63718 GATTGTACGTCTC----AATAGCT-GA-GTCTATATCCCATTGATGAATTCCTACTGCGA 63771 | ||||| ||||| | ||| || ||| | |||| || || || | || Sbjct 816197 GGTTGTAGGTCTCGAGGACACGCTCGATGTCATCACCCCA------GATACCCACAGAGA 816144 Query 63772 CACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGG 63831 ||||||| | ||||||||| |||| || ||||| ||| | || || | | ||| | Sbjct 816143 CACGCATGATCATGTGCTGTGGTCGCTCGACAATCTTGCCATCGATCTTAAGGAGGTACG 816084 Query 63832 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63883 || |||| ||| || || || || || | ||| ||||| || || || Sbjct 816083 ATCGCTCCAGAGTCTTGAAGCCGAAGTACTGGTAGTTGAAGTCACGGTCATA 816032 >seq12 Length=1358207 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| |||||| ||||| || | || | |||||| || || || | Sbjct 114305 CAAGCGAAGTCGGTGTGCAGGCCCTCATCACGGGAGATCAGTTCGTTTGAGAAGGTCAAA 114246 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| ||||| ||||| || ||||| || |||||||| || | || |||||| Sbjct 114245 CCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAAGCAAAAGCACCACTGAAGAAG 114186 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 || || ||||||||||||||||||| ||| Sbjct 114185 ATGCCCTCTACTGCAGCAAAGGCAACAAG 114157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813710876320