Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 145 1e-29 >seq4 Length=2550084 Score = 145 bits (160), Expect = 1e-29 Identities = 539/831 (65%), Gaps = 24/831 (3%) Strand=Plus/Minus Query 65858 ATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 65917 |||||| ||||| ||||| || ||||||| ||| |||||| ||| | ||| || | ||| Sbjct 816850 ATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCTTCAAGAATAGCGTACCA 816791 Query 65918 GACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCT-CTTTCGTATAGTGT--AT 65973 || | || | ||||| || | ||| | ||| | | ||| ||| | || Sbjct 816790 GA-GCTTCTGGGCCTTCATGGTC---TTGCGACCCTTACCGGCCTTCTCATACTTCTCAT 816735 Query 65974 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACA 66033 |||| || ||||| || || | || | | | ||||| || |||| || |||| Sbjct 816734 ACAAGGCCTCAAACTCCTCGCCGTAGCAATCGGCAAGGCCAGGGCACTCATTGGGGCACA 816675 Query 66034 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 66093 | | | ||| || |||| | || || || ||||| || |||||||| ||||| || | Sbjct 816674 TGAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAACAGATCAGGGATCCATAGCG 816615 Query 66094 CTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 66153 | | || ||||| | || || || || ||||| ||||| || ||||||| Sbjct 816614 CGAGGAACAAATCACGGGCTCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGA 816555 Query 66154 ACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 66213 || | | | ||| ||||| || || | ||| ||||| | | | || || || |||| Sbjct 816554 ACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCGGGTCGCTTGT 816495 Query 66214 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 66273 | || ||||| || | ||| | ||| ||||| || | || | | ||| || | | || Sbjct 816494 TGCCACCCTGGTCCACGTACCGAGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACAC 816435 Query 66274 CATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTG 66333 ||||||| ||||||||||| |||| || || || |||| || || | | | Sbjct 816434 CATTGGAGGTACCATTGGTACCGGCAATGTATGAACCGGTTGCGCGGAT-TCGGTGGACG 816376 Query 66334 AT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATA 66391 | ||||| || || || ||||| || ||||| | || || ||| || | || || || Sbjct 816375 TTGAGACCGATGCCACCAGCCATCTTGGAGATCATGGCACA-CGTCTTGAGGGTGTCGTA 816317 Query 66392 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 66451 ||| ||||| || || || ||| |||||| || | || || ||| | ||| | | Sbjct 816316 GATACCCTCAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAAGATAGCTGGGGCTG 816257 Query 66452 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 66511 | || || || || || | ||| || || ||||| ||||| | || || | || Sbjct 816256 AGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTAAAAAACTTCATGGACATGAG 816197 Query 66512 ATTGTACGTCTC----AATAGCT-GA-GTCTATATCCCATTGATGAATTCCTACTGCGAC 66565 ||||| ||||| | ||| || ||| | |||| || || || | ||| Sbjct 816196 GTTGTAGGTCTCGAGGACACGCTCGATGTCATCACCCCA------GATACCCACAGAGAC 816143 Query 66566 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 66625 |||||| | ||||||||| |||| || || |||||| | || || | | ||| || Sbjct 816142 ACGCATGATCATGTGCTGTGGTCGCTCGACAATCTTGCCATCGATCTTAAGGAGGTACGA 816083 Query 66626 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 66676 | |||| ||| || || || || || | ||| ||||| || || || Sbjct 816082 TCGCTCCAGAGTCTTGAAGCCGAAGTACTGGTAGTTGAAGTCACGGTCATA 816032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168735782960