Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 159 5e-34 seq12 107 3e-18 >seq4 Length=2550084 Score = 159 bits (176), Expect = 5e-34 Identities = 614/948 (65%), Gaps = 26/948 (3%) Strand=Plus/Minus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || || || || || ||||| || |||| || | |||| || ||||||||||| Sbjct 816966 GAGGCAAGGTTGCAGACGGCAACTTCATCAGGGGCGCTGTATTCGATGATTTCAGTGCAC 816907 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCATC 79739 ||||| | ||| || || | || | || || ||||| ||| || | ||| Sbjct 816906 AGGTTGGAGCTGCGAATAGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCATG-ATC 816848 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||| ||||| ||||| || ||||||| ||| |||||| ||| | ||| || | ||||| Sbjct 816847 CTTGTAAAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCTTCAAGAATAGCGTACCAGA- 816789 Query 79800 GACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TCGTATTGTGTATATA 79855 | || | ||||| || | |||| | ||| | ||| || || | ||| | Sbjct 816788 GCTTCTGGGCCTTCATGGT---CTTGCGACCCTTACCGGCCTTCTCATACTTCTCATACA 816732 Query 79856 ATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCA 79915 | || ||||| || || | |||| | | ||||| || || | || ||||| | Sbjct 816731 AGGCCTCAAACTCCTCGCCGTAGCAATCGGCAAGGCCAGGGCACTCATTGGGGCACATGA 816672 Query 79916 ACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975 | ||| || || | | || || || ||||| || |||||||| ||||| || || | Sbjct 816671 GAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAACAGATCAGGGATCCATAGCGCGA 816612 Query 79976 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 80035 || | ||| | || || ||| || ||||| ||||| || ||||||||| Sbjct 816611 GGAACAAATCACGGGCTCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAACT 816552 Query 80036 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTC 80095 | | | ||| | ||||| || || | ||| ||||| | | | || ||||| ||||| | Sbjct 816551 CGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCGGGTCGCTTGTTGC 816492 Query 80096 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 80155 | ||||| || | ||| | ||| ||||| || | || | | ||| || | | ||||| Sbjct 816491 CACCCTGGTCCACGTACCGAGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCAT 816432 Query 80156 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT- 80214 |||| ||||||||||| |||| || || || | || || || | | | | Sbjct 816431 TGGAGGTACCATTGGTACCGGCAATGTATGAACCGGTTGCGCGGAT-TCGGTGGACGTTG 816373 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGAT 80273 ||||| || || || ||||| || ||||| | || || ||| || | || || ||||| Sbjct 816372 AGACCGATGCCACCAGCCATCTTGGAGATCATGGCACA-CGTCTTGAGGGTGTCGTAGAT 816314 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 ||||| ||||| || || |||||| || | || || ||| | ||| | || Sbjct 816313 ACCCTCAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAAGATAGCTGGGGCTGAGG 816254 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || || || || || | ||| || || ||||| ||||| | || |||| || || Sbjct 816253 GGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTAAAAAACTTCATGGACATGAGGTT 816194 Query 80394 GTACGTCTC----AATAGCT-GAT-TCTATATCCCATTGATGAATTCCTACCGCGACACG 80447 ||| ||||| | ||| ||| || | |||| || || || | |||||| Sbjct 816193 GTAGGTCTCGAGGACACGCTCGATGTCATCACCCCA------GATACCCACAGAGACACG 816140 Query 80448 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTT 80507 ||| | ||||||||| |||| || || |||||| || || || | | ||| ||| Sbjct 816139 CATGATCATGTGCTGTGGTCGCTCGACAATCTTGCCATCGATCTTAAGGAGGTACGATCG 816080 Query 80508 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 |||| ||| || || || || || | ||| ||||| || || || Sbjct 816079 CTCCAGAGTCTTGAAGCCGAAGTACTGGTAGTTGAAGTCACGGTCATA 816032 >seq12 Length=1358207 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| |||||| ||||| || | || |||||||| || || || | Sbjct 114305 CAAGCGAAGTCGGTGTGCAGGCCCTCATCACGGGAGATCAGTTCGTTTGAGAAGGTCAAA 114246 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| ||||| ||||| || ||||| || ||||| ||||| | ||| |||||| Sbjct 114245 CCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAAGCAAAAGCACCACTGAAGAAG 114186 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 || || |||||||| |||||||||||||| Sbjct 114185 ATGCCCTCTACTGCAGCAAAGGCAACAAG 114157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264364690160