Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 154 2e-32 seq12 107 3e-18 >seq4 Length=2550084 Score = 154 bits (170), Expect = 2e-32 Identities = 303/442 (69%), Gaps = 16/442 (4%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||||| || Sbjct 816485 CAGGGTGGCAACAAGCGACCCGGTGCTTTCGCCATCTACCTTGAGCCTTGGCACGCCGAT 816544 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| | ||||| ||| || ||||||| |||||| | || Sbjct 816545 GTCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGAAAGGAAGAGGTCCGAGCCCGTGAT 816604 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 ||||| || || ||| | || ||| ||||||||||||| ||| || |||||| Sbjct 816605 TTGTTCCTCGCGCTATGGATCCCTGATCTGTTCATGAAGCGTGTCGAGAAGAACGGTG-- 816662 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||||||| | || || || || ||||||||| ||||| ||| Sbjct 816663 -ACTGGACTCTCATGTGCCCCAATGAGTGCCCTGGCCTTGCCGATTGCTACGGCGAGGAG 816721 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCA 97172 ||||||||| ||| | || | ||| ||||| || | | | || | ||| | Sbjct 816722 TTTGAGGCCTTGTATGAGAAGTATG----AGAAGGCCGGTAAGGGTCGCAAGACCATGAA 816777 Query 97173 ---CGAGAA-CTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACA 97227 | |||| || ||| | || | || ||| |||||| |||||||| | || | || Sbjct 816778 GGCCCAGAAGCTCTGGTACGCTATTCTTGA-AGCTCAGACTGAGACTGGTAACCCCTTCA 816836 Query 97228 TTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGG 97287 | || ||||||||| | || ||||| |||||||| || | ||||| || Sbjct 816837 TGCTTTACAAGGATCATGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACTATTCGCA 816896 Query 97288 GCTCCAATCTGTGCACGGAAAT 97309 ||||||| |||||||| ||||| Sbjct 816897 GCTCCAACCTGTGCACTGAAAT 816918 >seq12 Length=1358207 Score = 107 bits (118), Expect = 3e-18 Identities = 327/497 (66%), Gaps = 25/497 (5%) Strand=Plus/Plus Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426 || |||||| | |||| | ||||||||| ||| | |||| | | ||| | | Sbjct 114097 AAGAAGGCTGAGTGGGCATTGCGGTGGATCTCAGACAAGCAGTCCACCTTCGCTCAACGC 114156 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || || || || ||||||||||||||||| ||| |||||| ||||||| Sbjct 114157 CTTGTTGCCTTTGCTGCAGTAGAGGGCATCTTCTTCAGTGGTGCTTTTGCTTCCATCTTC 114216 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||||||||||||||| |||||||| || |||| | ||||| | || || || Sbjct 114217 TGGCTCAAGAAGCGCGGCCTCATGCCTGGTTTGACCTTCTCAAACGAACTGATCTCCCGT 114276 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG 125606 || |||||||| ||| ||||| || | ||| | | ||| || | | || Sbjct 114277 GATGAGGGCCTGCACACCGACTTCGC---TTGCCTG---CTCCACTCTCACCTT---AAG 114327 Query 125607 TGCAGATCCAGCGATGAAAAGGTCATCA--ACATTGTAACCGATGCCGTGAGGATAGAAC 125664 || | ||||| | || | | ||| | || | |||||||| || | || || Sbjct 114328 GGCCGTGCCAGCAAGCAAGTGAT--TCAGGATATCATCACCGATGCTGTCACTATCGAGA 114385 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGA-TTGGCATGAACTGCAAGCTAATG 125723 | || ||||| || ||| | || || | || | | | |||||||||| | | || ||| Sbjct 114386 AGGAATTTCTCACTGAAGCGCTTCC-CTGTGCTTTACTCGGCATGAACTCCGATCTCATG 114444 Query 125724 TGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC---CGCA 125778 | || || ||||| || || |||||||| || |||| | ||| | Sbjct 114445 AAGCAATATATTGAGTTCGTAGCCGATCGTCTTCT-----TGTTGCCCTCGGCAATGAGA 114499 Query 125779 AGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGA 125838 || | ||||| | | ||| ||||| || || ||| | ||| || || | || |||| Sbjct 114500 AGGTGTACAAGTCTACGAACCCCTTCGACTTTATGGAAAACATTTCTCTCGGTGGCAAGA 114559 Query 125839 CCAACTTTTTCGAGAAG 125855 ||||||| ||||||||| Sbjct 114560 CCAACTTCTTCGAGAAG 114576 Score = 105 bits (116), Expect = 1e-17 Identities = 199/290 (69%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||| ||||||| || ||||| | || || | ||||| Sbjct 113698 ATCTGGCAAATGTACAAGAAGCACGAGGCCTCGTTCTGGACTGCTGAGGAAATTGATCTT 113757 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || | || ||| | | || ||| || | |||| ||| | || Sbjct 113758 TCCAAGGATTTGCATGACTGGAACAACCGCCTGAATGCAGACGAGCAGTTCTTTGTTTCC 113817 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 |||||| | || |||||||||| || ||||| ||||||||||| || ||| | ||| Sbjct 113818 CACATTCTTGCTTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTGGTCGAGCGA 113877 Query 125199 TT---CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 || | || | |||| | || || |||| || || || || ||||| |||||| Sbjct 113878 TTTAGCGCTGA--AGTTCA-GATCCCGGAGGCCCGTTGTTTCTATGGCTTCCAGATCATG 113934 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 || |||||| | ||||| || | |||||| || || |||| ||||| Sbjct 113935 ATGGAGAACATCCACTCTGAGACCTACTCTCTGCTCATCGACACATACAT 113984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054623959440