Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq461 125 2e-23
seq2 104 5e-17
seq12 84.2 5e-11
>seq461
Length=561
Score = 125 bits (138), Expect = 2e-23
Identities = 148/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| || || ||||| | || ||||| ||||||||||| ||||||||
Sbjct 326 GTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCTAGCTGTTTTCCG 267
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | |||||||| || || || |||||||| || ||||| ||||| || ||
Sbjct 266 GCGAAGATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTC 207
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | ||| ||| || | || ||||| | || || || || || || | ||
Sbjct 206 ACGTTGTCGATGGTGTCG-GAGCTCTCCACCTCCAAGGTGATGGTTTTTCCGGTCAAGGT 148
Query 104542 TTTTACAAATATCTGCAT 104559
||| ||||| ||||||||
Sbjct 147 TTTCACAAAGATCTGCAT 130
Score = 102 bits (112), Expect = 2e-16
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || | | ||| | |||||||| |||||||||||
Sbjct 554 GTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGTTTTCCG 495
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | |||||| || || || || || || || || ||||| ||||| || ||
Sbjct 494 GCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTC 435
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | ||| ||| || | || ||||| | ||||| ||||| || || | |||
Sbjct 434 ACGTTGTCAATGGTGTCG-GAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTGTCAATGT 376
Query 104542 TTTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 375 CTTCACGAAAATCTGCAT 358
>seq2
Length=4202288
Score = 104 bits (114), Expect = 5e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| |||||||| || ||||| || || | ||||| || || || || |||
Sbjct 1893249 GTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 1893308
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| || || || || || || || || ||||||||||| | ||
Sbjct 1893309 GCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTAGACTTC 1893368
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| | || ||||| || ||||| ||||| ||||| | ||
Sbjct 1893369 ACATTGTCGATGGTATCAGATGACTCCACCTCCAGAGTAATGGTCTTTCCAGTTAAGGTC 1893428
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 1893429 TTGACGAAGATTTGCAT 1893445
Score = 87.8 bits (96), Expect = 4e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || |||| ||||| || || || || |||
Sbjct 1893761 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTACCA 1893820
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| || || || || || || || || ||||||||||| | ||
Sbjct 1893821 GCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 1893880
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || || | ||| ||| | || ||||| || || || ||||| || ||
Sbjct 1893881 ACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGT 1893933
>seq12
Length=1358207
Score = 84.2 bits (92), Expect = 5e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| || ||||| || || ||||| || ||||||| | ||||| |||
Sbjct 114160 GTTGCCTTTGCTGCAGTAGAGGGCATCTTCTTCAGTGGTGCTTTTGCTTCCATCTTCTGG 114219
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
| ||||| | ||||| ||||| || || || ||||| |||||| |||| | | ||
Sbjct 114220 CTCAAGAAGCGCGGCCTCATGCCTGGTTTGACCTTCTCAAACGAACTGATCTCCCGTGAT 114279
Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283
|| || | ||| ||||||||||||
Sbjct 114280 GAGGGCCTGCACACCGACTTCGCTTG 114305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151391112367752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |