Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq461 125 2e-23 seq2 104 5e-17 seq12 84.2 5e-11 >seq461 Length=561 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| | || ||||| ||||||||||| |||||||| Sbjct 326 GTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCTAGCTGTTTTCCG 267 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | |||||||| || || || |||||||| || ||||| ||||| || || Sbjct 266 GCGAAGATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTC 207 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| || | || ||||| | || || || || || || | || Sbjct 206 ACGTTGTCGATGGTGTCG-GAGCTCTCCACCTCCAAGGTGATGGTTTTTCCGGTCAAGGT 148 Query 104542 TTTTACAAATATCTGCAT 104559 ||| ||||| |||||||| Sbjct 147 TTTCACAAAGATCTGCAT 130 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || | | ||| | |||||||| ||||||||||| Sbjct 554 GTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGTTTTCCG 495 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | |||||| || || || || || || || || ||||| ||||| || || Sbjct 494 GCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTC 435 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| || | || ||||| | ||||| ||||| || || | ||| Sbjct 434 ACGTTGTCAATGGTGTCG-GAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTGTCAATGT 376 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 375 CTTCACGAAAATCTGCAT 358 >seq2 Length=4202288 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || ||||| || || | ||||| || || || || ||| Sbjct 1893249 GTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 1893308 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || || ||||||||||| | || Sbjct 1893309 GCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTAGACTTC 1893368 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| | || ||||| || ||||| ||||| ||||| | || Sbjct 1893369 ACATTGTCGATGGTATCAGATGACTCCACCTCCAGAGTAATGGTCTTTCCAGTTAAGGTC 1893428 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 1893429 TTGACGAAGATTTGCAT 1893445 Score = 87.8 bits (96), Expect = 4e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || |||| ||||| || || || || ||| Sbjct 1893761 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTACCA 1893820 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || || ||||||||||| | || Sbjct 1893821 GCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 1893880 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || | ||| ||| | || ||||| || || || ||||| || || Sbjct 1893881 ACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGT 1893933 >seq12 Length=1358207 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || ||||| || || ||||| || ||||||| | ||||| ||| Sbjct 114160 GTTGCCTTTGCTGCAGTAGAGGGCATCTTCTTCAGTGGTGCTTTTGCTTCCATCTTCTGG 114219 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 | ||||| | ||||| ||||| || || || ||||| |||||| |||| | | || Sbjct 114220 CTCAAGAAGCGCGGCCTCATGCCTGGTTTGACCTTCTCAAACGAACTGATCTCCCGTGAT 114279 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || || | ||| |||||||||||| Sbjct 114280 GAGGGCCTGCACACCGACTTCGCTTG 114305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151391112367752