Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4 140 4e-28 seq12 107 2e-18 >seq4 Length=2550084 Score = 140 bits (154), Expect = 4e-28 Identities = 539/832 (65%), Gaps = 26/832 (3%) Strand=Plus/Minus Query 63014 ATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63073 |||||| ||||| ||||| || ||||||| ||| |||||| ||| | ||| || | ||| Sbjct 816850 ATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCTTCAAGAATAGCGTACCA 816791 Query 63074 GACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCT--CTTTCGTATAGTGT--A 63128 || | || | ||||| || | ||| | |||| | | ||| ||| | | Sbjct 816790 GA-GCTTCTGGGCCTTCATGGTC---TTGCGAC-CCTTACCGGCCTTCTCATACTTCTCA 816736 Query 63129 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 63188 ||||| || ||||| || || | || | | | ||||| || |||| || ||| Sbjct 816735 TACAAGGCCTCAAACTCCTCGCCGTAGCAATCGGCAAGGCCAGGGCACTCATTGGGGCAC 816676 Query 63189 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63248 || | | ||| || |||| | || || || ||||| || |||||||| ||||| || Sbjct 816675 ATGAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAACAGATCAGGGATCCATAGC 816616 Query 63249 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63308 || | || | ||| | || || || || ||||| ||||| || |||||| Sbjct 816615 GCGAGGAACAAATCACGGGCTCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGG 816556 Query 63309 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63368 ||| | | | ||| | ||||| || || | ||| ||||| | | | || || || ||| Sbjct 816555 AACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCGGGTCGCTTG 816496 Query 63369 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63428 || || ||||| || | ||| | ||| ||||| || | || | | ||| || | | | Sbjct 816495 TTGCCACCCTGGTCCACGTACCGAGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACA 816436 Query 63429 CCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 63488 || || || ||||||||||||||| || || || | || || || | | Sbjct 816435 CCATTGGAGGTACCATTGGTACCGGCAATGTATGAACCGGTTGCGCGGAT-TCGGTGGAC 816377 Query 63489 GAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTGTCAT 63546 | | ||||| || || || ||||| || ||||| | || || ||| || | ||||| | Sbjct 816376 GTTGAGACCGATGCCACCAGCCATCTTGGAGATCATGGCACA-CGTCTTGAGGGTGTCGT 816318 Query 63547 AGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63606 |||||||||| ||||| || || |||||| || | || || ||| | ||| | Sbjct 816317 AGATACCCTCAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAAGATAGCTGGGGCT 816258 Query 63607 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 63666 || || || || || || | ||| || || ||||| ||||| | || || | | Sbjct 816257 GAGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTAAAAAACTTCATGGACATGA 816198 Query 63667 GATTGTACGTCTC----AATAGCT-GA-GTCTATATCCCATTGATGAATTCCTACTGCGA 63720 | ||||| ||||| | ||| || ||| | |||| || || || | || Sbjct 816197 GGTTGTAGGTCTCGAGGACACGCTCGATGTCATCACCCCA------GATACCCACAGAGA 816144 Query 63721 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGG 63780 ||||||| | ||||||||| |||| || || |||||| | || || | | ||| | Sbjct 816143 CACGCATGATCATGTGCTGTGGTCGCTCGACAATCTTGCCATCGATCTTAAGGAGGTACG 816084 Query 63781 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 || |||| ||| || || || || || | ||| ||||| || || || Sbjct 816083 ATCGCTCCAGAGTCTTGAAGCCGAAGTACTGGTAGTTGAAGTCACGGTCATA 816032 >seq12 Length=1358207 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| |||||| ||||| || | || |||||||| || || || | Sbjct 114305 CAAGCGAAGTCGGTGTGCAGGCCCTCATCACGGGAGATCAGTTCGTTTGAGAAGGTCAAA 114246 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| ||||| ||||| || ||||| || |||||||| || | ||| |||||| Sbjct 114245 CCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAAGCAAAAGCACCACTGAAGAAG 114186 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAG 33452 || || ||||||||||||||||||| ||| Sbjct 114185 ATGCCCTCTACTGCAGCAAAGGCAACAAG 114157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943353301040