Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5 122 8e-23 seq4 118 1e-21 seq2 116 3e-21 seq8 95.1 1e-14 seq461 89.7 5e-13 >seq5 Length=2272025 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || || || | ||| |||||| || |||||||| |||||| Sbjct 1174652 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1174711 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | |||||||||||||| ||| Sbjct 1174712 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 1174771 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 1174772 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 1174831 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || ||||| |||||||| Sbjct 1174832 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1174878 >seq4 Length=2550084 Score = 118 bits (130), Expect = 1e-21 Identities = 701/1108 (63%), Gaps = 25/1108 (2%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||||||||| | |||||||| | || | ||| || ||| | || Sbjct 817539 TTGACAACCTGGAACTCGCCGGCAAGGACACGACGAGAGTAGATGTTGGATGTGTAAGGC 817480 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| || |||||||| |||| || | || || |||||| |||| Sbjct 817479 TCGAAGCACTCGTTGTTACCCAGGATCTGAGATGTACTAGCAGTAGGCATGGGTGCCAGG 817420 Query 145178 A--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | | || ||||| | ||||||| ||||| | || |||| |||| |||| Sbjct 817419 AGCAGACTG--TTGCGGATACCGTGCTCCTTGACCTGCTCTCGGAGCGGCTCCCAGTCCC 817362 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | ||| | || |||||| |||||||||| |||| | || || || ||| || Sbjct 817361 AGAGCTCGGAAGGTTTCACGTTCCACATGTCGAACTGAAGGATACCTTCAGAGGCAGGAG 817302 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCA-ACTCGCCTCCAGA 145354 ||| | |||| ||| ||| ||||| |||| ||| ||| || | Sbjct 817301 AGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCAAGCT-GCACGGACGCAGTCAAA 817243 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 || || ||| || ||||| ||||| |||| ||| || ||| | ||| Sbjct 817242 GCAGCGTGATAGATAGTCTCAAAGATTTGTTTGTTCAGCTCACGAGCCTCAGGGGACTCA 817183 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 | |||||||| || | || ||||| || || ||||| | || || |||||||| Sbjct 817182 AAAGGCATGCGGAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCGACACCGATGGGA 817123 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATT 145534 || || ||||||||| | | ||| | ||| || | || || || || Sbjct 817122 CGGTGGCGCATGTTGCTGTTGCGAGCCTCAGGAACAGGGTAATGGTTGACATCAATGATC 817063 Query 145535 TTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGA 145594 || |||| ||| || || || || |||| | ||||||||| |||||| | | | Sbjct 817062 TTGTTCAGGTTGCGGACGACAGTCTGGGTAACCTCGTGCAACTTTTGGAAGTCATAACAA 817003 Query 145595 GCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTC 145654 | | || | | || | | | ||| | ||| || | || || || || Sbjct 817002 TCGTTGTTGTAGTCAACGAATGAAGGCAGGGCCAGCGAGGCAAGGTTGCAGACGGCAACT 816943 Query 145655 TCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCC 145714 || || | | ||||||||| | ||| || | ||||| ||| | || || || Sbjct 816942 TCATCAGGGGCGCTGTATTCGATGATTTCAGTGCACAGGTTGGAGCTGCGAATAGTGCCG 816883 Query 145715 AGATTTTGCTGATTACTTTTCCTGTT-GCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773 || || | ||| || || || | ||| ||| | |||||||| |||||| | || || Sbjct 816882 AGGTTCTTCTGGTTGCTCTTGCGGTTGGCATG-ATCCTTGTAAAGCATGAAGGGGTTACC 816824 Query 145774 AGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCG----CACGCACCTG 145827 |||||| ||| | || || || | | || || || | ||| | || | | || Sbjct 816823 AGTCTCAGTCTGAG-CTTCAAGA-ATAGCGTACCAGAGCTTCTGGGCCTTCATGGTCTTG 816766 Query 145828 CTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTA 145887 | | || ||||| || || || ||| || | |||||||| | ||||| Sbjct 816765 CGACCCTTACCGGCCTTC----TCATACTTCTCATACAAGGCCTCAAACTCCTCGCCGTA 816710 Query 145888 GCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTT 145947 |||||||| ||||| || |||| ||||| ||||| || | ||| | ||||| | Sbjct 816709 GCAATCGGCAAGGCCAGGGCACTCATTGGGGCACATGAGAGTCCAGTCACCGTTCTTCTC 816650 Query 145948 GACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCA 146007 ||| |||| ||| |||| ||| || | ||| |||||| | ||| || || ||| | Sbjct 816649 GACACGCTTCATGAACAGATCAGGGATCCATAGCGCGAGGAACAAATCACGGGCTCGGAC 816590 Query 146008 ATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACG 146066 || || || ||| | || | | || | | ||| || |||||||| | Sbjct 816589 CTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAACTCGA-AGACATCGGCGTGCCAAG 816531 Query 146067 GTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACGTA 146123 | |||| |||| ||||| || || ||| ||||||||||||||||||| || Sbjct 816530 GCTCAAGGTAGATGGCGAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCCACGTACCGAG 816471 Query 146124 CCATGTTGTTAAAGACGCGCACCATGGG 146151 | ||||||| ||||| || | |||||| Sbjct 816470 CAGTGTTGTTGAAGACACGAAGCATGGG 816443 >seq2 Length=4202288 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | || | ||| || ||||| ||||||||||| |||||| Sbjct 1893219 CCGCCACGGAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTC 1893278 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | ||||||||||||||| ||| Sbjct 1893279 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGG 1893338 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | ||||| | ||||| | Sbjct 1893339 ATACCCTCCTTGTCCTGAATCTTAGACTTCACATTGTCGATGGTATCAGATGACTCCACC 1893398 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || |||| || || ||||| || ||||| Sbjct 1893399 TCCAGAGTAATGGTCTTTCCAGTTAAGGTCTTGACGAAGATTTGCAT 1893445 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | || | ||| || ||||| ||||||||||| ||| | Sbjct 1893447 CCACCACGAAGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAC 1893506 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| | || | ||||||||||||||| || Sbjct 1893507 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGA 1893566 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || |||| |||||| | Sbjct 1893567 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAGGACTCAACC 1893626 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 || | || | ||| || || || || || || |||| Sbjct 1893627 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 1893663 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| || |||||||| ||| Sbjct 1893731 CCACCACGGAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1893790 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| |||||||| || || |||| | ||||||||||||||| || Sbjct 1893791 AGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGA 1893850 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || || || ||||| || || ||||| | || | || |||| |||||||| Sbjct 1893851 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGA 1893908 >seq8 Length=1962940 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| ||||| ||||||||||| ||| ||| Sbjct 146543 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 146484 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 146483 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 146424 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| || | ||| | ||| || || || || || || |||| Sbjct 146423 CGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 146364 Query 131225 AA 131226 || Sbjct 146363 AA 146362 >seq461 Length=561 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || ||||| | ||| ||||||||||| |||||||| ||| Sbjct 129 GCCACCACGGAGACGGAGGACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGC 70 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||| |||||||| || || ||| |||| || | ||||| || || || Sbjct 69 GAGGGTACGGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGG 10 Query 131127 GATTCCTTC 131135 ||| ||||| Sbjct 9 GATACCTTC 1 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||| || ||||||||||| || || || ||| || || || || || Sbjct 554 GTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGTTTTCCG 495 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| || | ||||||||| || ||||| || || ||||| ||| ||| ||| Sbjct 494 GCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTC 435 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| | ||| | || | |||| || || || || | || Sbjct 434 ACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTGTCAATGTC 375 Query 131218 TTTACGAAAATCTGCAT 131234 || |||||||||||||| Sbjct 374 TTCACGAAAATCTGCAT 358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472009885320960