Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 141 1e-28 >seq4 Length=2550084 Score = 141 bits (156), Expect = 1e-28 Identities = 538/831 (65%), Gaps = 24/831 (3%) Strand=Plus/Minus Query 62869 ATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 62928 |||||| ||||| ||||| || ||||||| ||| |||||| ||| | ||| || | ||| Sbjct 816850 ATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCTTCAAGAATAGCGTACCA 816791 Query 62929 GACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCT-CTTTCGTATAGTGT--AT 62984 || | || | ||||| || | ||| | ||| | | ||| ||| | || Sbjct 816790 GA-GCTTCTGGGCCTTCATGGTC---TTGCGACCCTTACCGGCCTTCTCATACTTCTCAT 816735 Query 62985 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACA 63044 |||| || ||||| || || | || | | || ||||| || |||| || |||| Sbjct 816734 ACAAGGCCTCAAACTCCTCGCCGTAGCAATCGGCAAGGCCAGGGCACTCATTGGGGCACA 816675 Query 63045 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63104 | | | ||| || |||| | || || || ||||| || |||||||| ||||| || | Sbjct 816674 TGAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAACAGATCAGGGATCCATAGCG 816615 Query 63105 CTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63164 | | || | ||| | || || || || ||||| ||||| || ||||||| Sbjct 816614 CGAGGAACAAATCACGGGCTCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGA 816555 Query 63165 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63224 || | | | ||| | ||||| || || | ||| ||||| | | | || || || |||| Sbjct 816554 ACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCGGGTCGCTTGT 816495 Query 63225 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63284 | || ||||| || | ||| | ||| ||||| || | || | | ||| || | | || Sbjct 816494 TGCCACCCTGGTCCACGTACCGAGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACAC 816435 Query 63285 CATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTG 63344 ||||||| ||||||||||| || | || || || | || || || | | | Sbjct 816434 CATTGGAGGTACCATTGGTACCGGCAATGTATGAACCGGTTGCGCGGAT-TCGGTGGACG 816376 Query 63345 AT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATA 63402 | ||||| || || || ||||| || ||||| | || || ||| || | || || || Sbjct 816375 TTGAGACCGATGCCACCAGCCATCTTGGAGATCATGGCACA-CGTCTTGAGGGTGTCGTA 816317 Query 63403 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63462 ||| ||||| || || || ||| |||||| || | || || ||| | ||| | | Sbjct 816316 GATACCCTCAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAAGATAGCTGGGGCTG 816257 Query 63463 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAG 63522 | || || || || || | ||| || || ||||| ||||| | || || | || Sbjct 816256 AGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTAAAAAACTTCATGGACATGAG 816197 Query 63523 ATTGTACGTCTC----AATAGCT-GA-GTCTATATCCCATTGATGAATTCCTACTGCGAC 63576 ||||| ||||| | ||| || ||| | |||| || || || | ||| Sbjct 816196 GTTGTAGGTCTCGAGGACACGCTCGATGTCATCACCCCA------GATACCCACAGAGAC 816143 Query 63577 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 63636 |||||| | ||||||||| |||| || || |||||| | || || | | ||| || Sbjct 816142 ACGCATGATCATGTGCTGTGGTCGCTCGACAATCTTGCCATCGATCTTAAGGAGGTACGA 816083 Query 63637 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63687 | |||| ||| || || || || || | ||| ||||| || || || Sbjct 816082 TCGCTCCAGAGTCTTGAAGCCGAAGTACTGGTAGTTGAAGTCACGGTCATA 816032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628087322400