Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq5 105 6e-18 seq8 104 2e-17 >seq2 Length=4202288 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || ||||| || || || | ||||| || ||||| | | Sbjct 1893445 ATGCAAATCTTCGTCAAGACCTTAACTGGAAAGACCATTACTCTGGAGGTGGAGTCATCT 1893386 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || ||||| |||||||||||||| || || || || Sbjct 1893385 GATACCATCGACAATGTGAAGTCTAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAG 1893326 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| || || ||| | ||||| ||||||| | ||| |||||| Sbjct 1893325 CAGCGTCTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTACAAC 1893266 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || ||||||||| Sbjct 1893265 ATTCAGAAGGAATCCACC 1893248 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || || || |||| ||| | ||| || | || Sbjct 1893649 ACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGACACCATCGACAATGTGAAGTCC 1893590 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || ||||| || || ||||| || Sbjct 1893589 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGAAAG 1893530 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| |||||| | ||||| ||||||||||| || ||||||||| | || Sbjct 1893529 CAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAATCCACCCTCCAC 1893470 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || ||||| | || || ||| Sbjct 1893469 CTTGTCCTGCGACTTCGTGGTGGT 1893446 Score = 116 bits (128), Expect = 3e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || || || |||| ||| | ||| | |||| Sbjct 1893933 ACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAGTCC 1893874 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| || || || || |||||||| ||||| || || Sbjct 1893873 AAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTTGCTGGTAAG 1893814 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||| ||| ||||||| |||||||| || || || |||||| Sbjct 1893813 CAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACC 1893760 >seq5 Length=2272025 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || ||| |||| ||||| ||||| | Sbjct 1174881 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1174822 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| || |||| || || || ||||||||||| || || || || Sbjct 1174821 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 1174762 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || ||||| ||||| || || ||| | ||||| ||||||| | ||| ||| Sbjct 1174761 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTAC 1174702 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || |||| | || || || | || |||| || ||| Sbjct 1174701 AACATCCAGAAGGAGAGCACCCTCCACTTGGTCCTCCGCCTGCGTGGTGGT 1174651 >seq8 Length=1962940 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| ||||| || || || | || ||| | Sbjct 146362 TTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCAT 146421 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| ||||| || || || || || || Sbjct 146422 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 146481 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || |||||||| ||| | |||||| ||||||| ||||||| |||||||| || || Sbjct 146482 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 146541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725472975110