Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq2 127 2e-24
seq5 105 6e-18
seq8 104 2e-17
>seq2
Length=4202288
Score = 127 bits (140), Expect = 2e-24
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || ||||| || || || | ||||| || ||||| | |
Sbjct 1893445 ATGCAAATCTTCGTCAAGACCTTAACTGGAAAGACCATTACTCTGGAGGTGGAGTCATCT 1893386
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || | || || ||||| |||||||||||||| || || || ||
Sbjct 1893385 GATACCATCGACAATGTGAAGTCTAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAG 1893326
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| |||||||| ||||| || || ||| | ||||| ||||||| | ||| ||||||
Sbjct 1893325 CAGCGTCTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTACAAC 1893266
Query 22399 ATTCAAAAAGAATCCACC 22416
||||| || |||||||||
Sbjct 1893265 ATTCAGAAGGAATCCACC 1893248
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||||||||| || || || |||| ||| | ||| || | ||
Sbjct 1893649 ACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGACACCATCGACAATGTGAAGTCC 1893590
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || || || || ||||| || || ||||| ||
Sbjct 1893589 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGAAAG 1893530
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| |||||| | ||||| ||||||||||| || ||||||||| | ||
Sbjct 1893529 CAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAATCCACCCTCCAC 1893470
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
| || ||||| | || || |||
Sbjct 1893469 CTTGTCCTGCGACTTCGTGGTGGT 1893446
Score = 116 bits (128), Expect = 3e-21
Identities = 130/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||||||||| || || || |||| ||| | ||| | ||||
Sbjct 1893933 ACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAGTCC 1893874
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| ||||| || || || || |||||||| ||||| || ||
Sbjct 1893873 AAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTTGCTGGTAAG 1893814
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
||| | ||||| ||| ||| ||||||| |||||||| || || || ||||||
Sbjct 1893813 CAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACC 1893760
>seq5
Length=2272025
Score = 105 bits (116), Expect = 6e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| || || || || || | || || || ||| |||| ||||| ||||| |
Sbjct 1174881 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1174822
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
|||| ||| | ||| || |||| || || || ||||||||||| || || || ||
Sbjct 1174821 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 1174762
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || ||||| ||||| || || ||| | ||||| ||||||| | ||| |||
Sbjct 1174761 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTAC 1174702
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || || || |||| | || || || | || |||| || |||
Sbjct 1174701 AACATCCAGAAGGAGAGCACCCTCCACTTGGTCCTCCGCCTGCGTGGTGGT 1174651
>seq8
Length=1962940
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || || || || |||| ||||| || || || | || ||| |
Sbjct 146362 TTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCAT 146421
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| || || || ||||||||||| ||||| || || || || || ||
Sbjct 146422 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 146481
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || |||||||| ||| | |||||| ||||||| ||||||| |||||||| || ||
Sbjct 146482 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 146541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419725472975110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |