Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 1e-23
seq12 93.3 9e-14
>seq2
Length=4202288
Score = 125 bits (138), Expect = 1e-23
Identities = 437/673 (65%), Gaps = 13/673 (2%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || ||| |||| ||||||||||||||||||||||| | |||| ||||| || | |
Sbjct 3655673 GTCGGCTCTTTGTCTGGTGGTTGGAAGATGAAGCTGGCTTTGGCTCGAGCCATGCTGCAG 3655732
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
|| || ||||| || || || || || || || ||||| | || |||| | ||
Sbjct 3655733 CGCGCTGATGTGCTTCTTCTGGACGAACCTACTAACCATCTTGATGTTGACAACATCGCT 3655792
Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGA--ATGTTTCTTCCCTCATTGTCTCTCACG 279873
||||| | | |||||| | |||| | || || | | ||||| || ||||
Sbjct 3655793 TGGCTTGAGAACTACCTCA--AGTCGCACCCCGATATTACCAGTTTGATTGTGTCCCACG 3655850
Query 279874 ACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGC 279933
||||||| ||| | || ||| | ||| |||| ||||||||| | || |||||
Sbjct 3655851 ACTCTGGTTTCTTGGACAACGTCACCACTGACATCTATCACTATGAACCCAACAAGAAGC 3655910
Query 279934 TCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCT 279993
| | ||| || |||||| |||||||||| | || |||||||| |
Sbjct 3655911 TGGCTTGTTACAAGGGTAACCTGGCTGCTTTCGTCGAGCTCCGTCCTGAGGCCAAGAGTT 3655970
Query 279994 ACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053
|||| || | | | | || | ||| |||||||| || || | || |
Sbjct 3655971 ACTACACTTTGTCAGCCTCGAACGTCCAGTTCAAATTCCCTCCTCCGGGTATCCTCACTG 3656030
Query 280054 GCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATCC 280111
| | | ||| || ||| || ||||| ||| | | || || || || ||
Sbjct 3656031 GTGTTAAGTCACAGACTCGAGCCATCATCCGAATGAC--TAATGTGTCGTTCAGCTACCC 3656088
Query 280112 CAATGGCCCCAA--CATCT-TCAGCAG-TGTCAACTCGCAGGTTTCTATGAACTCACGGA 280167
||||| |||||| ||||| ||| ||| |||| | || |||| || || ||
Sbjct 3656089 CAATGCCCCCAAGCCATCTCTCA-CAGATGTCTCTTGTCAACTTTCCCTGTCGTCTCGTG 3656147
Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227
| | | | ||||| ||||||||||| || ||||| || || ||||| | |||||||| |
Sbjct 3656148 TGGCTATTATTGGCCCCAATGGTGCCGGAAAGTCGACTCTTATCAAGTTGCTGACTGGTG 3656207
Query 280228 AGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCG 280287
|||| || || || || |||||| ||||| | || || | |||| |
Sbjct 3656208 AGACTGTTCCCTCTACCGGAAAGGTCGAGAAGCACCCCAATCTACGTATCGGTTACATTA 3656267
Query 280288 CTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTC 280347
||||||||| | | ||| | |||| ||| |||| | ||||||||||| ||| | |
Sbjct 3656268 AGCAGCACGCTCTGGAGCACGTTGAGATGCACTTGGAGAAAACTCCTAACCAGTACCTCC 3656327
Query 280348 AGTGGCGCTATGC 280360
||||||| |||||
Sbjct 3656328 AGTGGCGATATGC 3656340
>seq12
Length=1358207
Score = 93.3 bits (102), Expect = 9e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 251526 CATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTC 251585
||||||||| | ||||| ||| ||||| |||||||| || | |||||| |
Sbjct 114609 CATCACACCGGCTTTCTGATAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 114550
Query 251586 CAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCC 251645
||||| || ||||| |||||||||||||| || | |||||| ||| || |||
Sbjct 114549 GAGAGAAATGTTTTCCATAAAGTCGAAGGGGTTCGTAGACTTGTACACCTTCTCATTGCC 114490
Query 251646 AAGTGCTACGAAGATG-CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGT 251704
|| || || |||| | || || || || ||||| | ||| || ||| || || ||||
Sbjct 114489 GAGGGCAAC-AAGAAGACGATCGGCTACGAACTCAATATATTGCTTCATGAGATCGGAGT 114431
Query 251705 TCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCG 251754
||||||| | | | ||| |||| || ||| || |||||||| |||
Sbjct 114430 TCATGCCGAGTAAAGCACAGGGAAGCGCTTCAGTGAGAAATTCCTTCTCG 114381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027830294435454
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |