Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 125 1e-23 seq12 93.3 9e-14 >seq2 Length=4202288 Score = 125 bits (138), Expect = 1e-23 Identities = 437/673 (65%), Gaps = 13/673 (2%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||| |||| ||||||||||||||||||||||| | |||| ||||| || | | Sbjct 3655673 GTCGGCTCTTTGTCTGGTGGTTGGAAGATGAAGCTGGCTTTGGCTCGAGCCATGCTGCAG 3655732 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || || ||||| || || || || || || || ||||| | || |||| | || Sbjct 3655733 CGCGCTGATGTGCTTCTTCTGGACGAACCTACTAACCATCTTGATGTTGACAACATCGCT 3655792 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGA--ATGTTTCTTCCCTCATTGTCTCTCACG 279873 ||||| | | |||||| | |||| | || || | | ||||| || |||| Sbjct 3655793 TGGCTTGAGAACTACCTCA--AGTCGCACCCCGATATTACCAGTTTGATTGTGTCCCACG 3655850 Query 279874 ACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGC 279933 ||||||| ||| | || ||| | ||| |||| ||||||||| | || ||||| Sbjct 3655851 ACTCTGGTTTCTTGGACAACGTCACCACTGACATCTATCACTATGAACCCAACAAGAAGC 3655910 Query 279934 TCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCT 279993 | | ||| || |||||| |||||||||| | || |||||||| | Sbjct 3655911 TGGCTTGTTACAAGGGTAACCTGGCTGCTTTCGTCGAGCTCCGTCCTGAGGCCAAGAGTT 3655970 Query 279994 ACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053 |||| || | | | | || | ||| |||||||| || || | || | Sbjct 3655971 ACTACACTTTGTCAGCCTCGAACGTCCAGTTCAAATTCCCTCCTCCGGGTATCCTCACTG 3656030 Query 280054 GCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATCC 280111 | | | ||| || ||| || ||||| ||| | | || || || || || Sbjct 3656031 GTGTTAAGTCACAGACTCGAGCCATCATCCGAATGAC--TAATGTGTCGTTCAGCTACCC 3656088 Query 280112 CAATGGCCCCAA--CATCT-TCAGCAG-TGTCAACTCGCAGGTTTCTATGAACTCACGGA 280167 ||||| |||||| ||||| ||| ||| |||| | || |||| || || || Sbjct 3656089 CAATGCCCCCAAGCCATCTCTCA-CAGATGTCTCTTGTCAACTTTCCCTGTCGTCTCGTG 3656147 Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227 | | | | ||||| ||||||||||| || ||||| || || ||||| | |||||||| | Sbjct 3656148 TGGCTATTATTGGCCCCAATGGTGCCGGAAAGTCGACTCTTATCAAGTTGCTGACTGGTG 3656207 Query 280228 AGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCG 280287 |||| || || || || |||||| ||||| | || || | |||| | Sbjct 3656208 AGACTGTTCCCTCTACCGGAAAGGTCGAGAAGCACCCCAATCTACGTATCGGTTACATTA 3656267 Query 280288 CTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTC 280347 ||||||||| | | ||| | |||| ||| |||| | ||||||||||| ||| | | Sbjct 3656268 AGCAGCACGCTCTGGAGCACGTTGAGATGCACTTGGAGAAAACTCCTAACCAGTACCTCC 3656327 Query 280348 AGTGGCGCTATGC 280360 ||||||| ||||| Sbjct 3656328 AGTGGCGATATGC 3656340 >seq12 Length=1358207 Score = 93.3 bits (102), Expect = 9e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 251526 CATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTC 251585 ||||||||| | ||||| ||| ||||| |||||||| || | |||||| | Sbjct 114609 CATCACACCGGCTTTCTGATAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 114550 Query 251586 CAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCC 251645 ||||| || ||||| |||||||||||||| || | |||||| ||| || ||| Sbjct 114549 GAGAGAAATGTTTTCCATAAAGTCGAAGGGGTTCGTAGACTTGTACACCTTCTCATTGCC 114490 Query 251646 AAGTGCTACGAAGATG-CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGT 251704 || || || |||| | || || || || ||||| | ||| || ||| || || |||| Sbjct 114489 GAGGGCAAC-AAGAAGACGATCGGCTACGAACTCAATATATTGCTTCATGAGATCGGAGT 114431 Query 251705 TCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCG 251754 ||||||| | | | ||| |||| || ||| || |||||||| ||| Sbjct 114430 TCATGCCGAGTAAAGCACAGGGAAGCGCTTCAGTGAGAAATTCCTTCTCG 114381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830294435454