Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq461 170 4e-37
seq5 152 9e-32
seq8 147 4e-30
seq2 143 5e-29
seq12 91.5 3e-13
seq9 87.8 3e-12
>seq461
Length=561
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | ||||| || || || || || || |||||||| || |||| |
Sbjct 356 CCACCACGGAGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCG 297
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || || || ||||||| ||| || |||||||| || | ||| |||||||| || |||
Sbjct 296 AGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGA 237
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||||||||| || ||||| ||||| ||| ||||||||||| | || ||
Sbjct 236 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACC 177
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||||||||||||||||| || | ||| || || || ||||||||
Sbjct 176 TCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 130
Score = 87.8 bits (96), Expect = 3e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | ||||| || || || ||||| ||||||||||| || |||| |
Sbjct 128 CCACCACGGAGACGGAGGACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCG 69
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||||| ||| || |||||||| || | |||||| || || || ||
Sbjct 68 AGGGTACGGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGG 9
Query 68355 ATGCCTTC 68362
|| |||||
Sbjct 8 ATACCTTC 1
>seq5
Length=2272025
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||||||| || ||| ||| || |||||||| || |||
Sbjct 1174652 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1174711
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || || || || |||| || ||||| || ||
Sbjct 1174712 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 1174771
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 1174772 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 1174831
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || |||||||||||||||||||| ||||||||
Sbjct 1174832 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1174878
>seq8
Length=1962940
Score = 147 bits (162), Expect = 4e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || |||||||| || | ||||| || | |||||| |||||||| ||
Sbjct 146541 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 146482
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || ||||| || |||||||| |||||||| || ||||| | |||||| |||
Sbjct 146481 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 146422
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | ||||||||| || |||||||||||||| |||||
Sbjct 146421 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 146363
>seq2
Length=4202288
Score = 143 bits (158), Expect = 5e-29
Identities = 162/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| |||| || | ||| || ||||| || || || ||||| || |||||
Sbjct 1893447 CCACCACGAAGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAC 1893506
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || || | || ||||| || |||
Sbjct 1893507 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGA 1893566
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||| || ||||||||||| | || || ||
Sbjct 1893567 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAGGACTCAACC 1893626
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | |||||||| || || ||||||||||||||||
Sbjct 1893627 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 1893663
Score = 140 bits (154), Expect = 6e-28
Identities = 154/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| ||| || |||||||| || |||||||| || ||||||
Sbjct 1893731 CCACCACGGAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1893790
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || || || || || | || ||||| || |||
Sbjct 1893791 AGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGA 1893850
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||||||| ||||||||||| | || || ||
Sbjct 1893851 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACC 1893910
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | |||||||| || |||||||
Sbjct 1893911 TCAAGAGTGATGGTCTTGCCCGTGA 1893935
Score = 118 bits (130), Expect = 2e-21
Identities = 167/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286
|||| | || || || || || | || | ||| || ||||| || || || ||||| |
Sbjct 1893211 TTTACTGACCGCCACGGAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGT 1893270
Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346
| ||| || || | || || || | |||||| || || || || || | || ||||
Sbjct 1893271 AGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGT 1893330
Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406
| || || || || |||||||| |||||||| | ||| || |||||||| || | ||
Sbjct 1893331 CCGGGGGGATACCCTCCTTGTCCTGAATCTTAGACTTCACATTGTCGATGGTATCAGATG 1893390
Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| || || |||| || ||||| ||||| || | |||||||||||| || |||||
Sbjct 1893391 ACTCCACCTCCAGAGTAATGGTCTTTCCAGTTAAGGTCTTGACGAAGATTTGCAT 1893445
>seq12
Length=1358207
Score = 91.5 bits (100), Expect = 3e-13
Identities = 236/357 (66%), Gaps = 6/357 (2%)
Strand=Plus/Plus
Query 173088 TGAAGCAGGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACT 173147
|| ||||| | | |||||| ||||||| |||||||| ||| | || ||||||
Sbjct 325585 TGGAGCAGCATAGCATTGACTGTGTTATGCATTTTGCTGCCCAGTCGCACGTGGACCTGA 325644
Query 173148 CGTTCGGTAACTCGCTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGG 173207
||||| || ||| | || ||| | || || ||||||||||| || || ||||
Sbjct 325645 GCTTCGGCAATTCGTACGGCTTCACCCACACTAATGTATACGGGACCCATGTCCTGCTGG 325704
Query 173208 AATGCGCGAGGCTCTATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTAT 173267
|| | || | | |||| ||| || || ||| | | || || || || || |
Sbjct 325705 AAAGTGCAAAGAAGGTTGGCA---TCCGCCGTTTTATCCACATCTCGACGGATGAGGTCT 325761
Query 173268 ACGGCGAGAGCAGTCTGGGCAAAAAAGAAGGCCTCGATGAACACTCGTCCCTCGAGCCAA 173327
|||| |||| | | | ||| |||| | ||||| ||| | ||| ||| ||||
Sbjct 325762 ACGGTGAGATTAATTCCGACAATGAAGATGCTCTCGA--AACCAGCATCC-TCGCCCCAA 325818
Query 173328 CAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATGATGGCACGTGCATATCACACAT 173387
||||||| ||||||||| |||||| | || || ||| ||| | | ||||| | |
Sbjct 325819 CAAACCCTTATGCAGCAAGCAAGGCGGCAGCTGAGATGCTGGTTCAGTCTTATCAAAAAA 325878
Query 173388 CGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCAGT 173444
| |||||| || ||||| | |||| | |||||||| || || || || ||||
Sbjct 325879 GCTTCAAGCTTCCCATCATCATCGTGCGCAGTAACAATGTCTACGGTCCTCACCAGT 325935
>seq9
Length=1604720
Score = 87.8 bits (96), Expect = 3e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 275310 ATATCTCGTGCGCGACAACCGGCCGCATATGAAGAAGGCCGGCAACCTCCGGTCCGCCTT 275369
||| | ||| ||||| | ||||||| ||| ||||| || ||||| | | |||
Sbjct 1221263 ATACCGCGTCCGCGAGGATAGGCCGCACATGCGCAAGGCAGGGAACCTGAGATGGAACTT 1221322
Query 275370 TACCAAGACAGACGGCGAATTCTTTGTCATCTTTGACGCCGACTTCTGCCCAAGGCCCGA 275429
| || || |||||||| ||||||||||| |||||||| ||||| |||||| | || ||
Sbjct 1221323 TGCCCGAACTGACGGCGAGTTCTTTGTCATTTTTGACGCAGACTTTTGCCCACGCCCAGA 1221382
Query 275430 CTTCCTCGAGGAG 275442
|||| || |||||
Sbjct 1221383 CTTCATCAAGGAG 1221395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921616708981680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |