Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq12 158 3e-33 seq461 125 2e-23 seq5 107 5e-18 seq2 105 2e-17 >seq12 Length=1358207 Score = 158 bits (174), Expect = 3e-33 Identities = 154/194 (79%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 269133 CGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATT 269192 |||| |||| ||| || | |||| ||||| ||||||||||||| |||||||| || || Sbjct 114404 CGCT-TCCC-TGTGCTTTACTCGGCATGAACTCCGATCTCATGAAGCAATATATTGAGTT 114461 Query 269193 CGTGGCTGATCGTATCTTCACG--GCACTCGGTTATGAGAAAGTGTACAATTCGAAGAAT 269250 ||| || ||||| ||||| | || ||||| ||||||| |||||||| || | ||| Sbjct 114462 CGTAGCCGATCG--TCTTCTTGTTGCCCTCGGCAATGAGAAGGTGTACAAGTCTACGAAC 114519 Query 269251 CCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGT 269310 ||||||| |||||||||| ||||| |||| || ||||| ||||||||||| |||||| Sbjct 114520 CCCTTCGACTTTATGGAAAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGT 114579 Query 269311 GTCAGCGACTATCA 269324 ||| | |||||||| Sbjct 114580 GTCGGTGACTATCA 114593 >seq461 Length=561 Score = 125 bits (138), Expect = 2e-23 Identities = 169/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | || ||| || ||||| || ||||||||| Sbjct 356 CCACCACGGAGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCG 297 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||||||| |||||||| |||||||||| | |||||| |||||| Sbjct 296 AGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTG---GTCTGGG 240 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 |||||||| || |||||||| || || |||||||| || || | || |||| Sbjct 239 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTC--- 183 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| || || ||||||| || || || || |||||||| Sbjct 182 TCCACCTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 130 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || || | || || |||||||| | ||||||||| |||||| Sbjct 548 TCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGTTTTCCGGCGAAG 489 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || |||||| || || || |||||||| ||||| |||||||| Sbjct 488 ATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTG 429 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || || | || ||||||||||| |||| ||||| Sbjct 428 TCAATGGTGTCGGAGCTC---TCCACCTCCAAAGTAATCGTCTTCCCTGTCAATGTCTTC 372 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 371 ACGAAAATCTGCAT 358 >seq5 Length=2272025 Score = 107 bits (118), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||| || || ||||| || |||||| || ||||| ||||| || | || || || Sbjct 1174682 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 1174741 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 || ||||| || ||||| || ||||| || || || |||||||| || | || Sbjct 1174742 GCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1174801 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || || | ||| || || || || || |||||||||||||| || || ||| Sbjct 1174802 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTC 1174861 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| |||||||| Sbjct 1174862 TTGACGAAGATCTGCAT 1174878 >seq2 Length=4202288 Score = 105 bits (116), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| || || || || | ||| ||| || || || || ||||||| Sbjct 1893447 CCACCACGAAGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAC 1893506 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || ||||| ||||| ||||||||||| || || ||| Sbjct 1893507 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTG---GTCCGGG 1893563 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | ||||| || || || | ||| || || Sbjct 1893564 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAGGACTCA 1893623 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 || || || ||||| ||||| || || || |||||||||| Sbjct 1893624 ACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 1893663 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || ||||| | || || || || | ||| ||| || || || || |||||| Sbjct 1893216 TGACCGCCACGGAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCG 1893275 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || ||||| ||||| || | || || || || ||||| |||||||| || Sbjct 1893276 CTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGG 1893335 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || ||||| || || | ||||| || || || | ||| || || Sbjct 1893336 GGGATACCCTCCTTGTCCTGAATCTTAGACTTCACATTGTCGATGGTATCAGATGACTCC 1893395 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || | ||||||||||| || ||||| Sbjct 1893396 ACCTCCAGAGTAATGGTCTTTCCAGTTAAGGTCTTGACGAAGATTTGCAT 1893445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179646933524932