Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq12 158 3e-33
seq461 125 2e-23
seq5 107 5e-18
seq2 105 2e-17
>seq12
Length=1358207
Score = 158 bits (174), Expect = 3e-33
Identities = 154/194 (79%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 269133 CGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATT 269192
|||| |||| ||| || | |||| ||||| ||||||||||||| |||||||| || ||
Sbjct 114404 CGCT-TCCC-TGTGCTTTACTCGGCATGAACTCCGATCTCATGAAGCAATATATTGAGTT 114461
Query 269193 CGTGGCTGATCGTATCTTCACG--GCACTCGGTTATGAGAAAGTGTACAATTCGAAGAAT 269250
||| || ||||| ||||| | || ||||| ||||||| |||||||| || | |||
Sbjct 114462 CGTAGCCGATCG--TCTTCTTGTTGCCCTCGGCAATGAGAAGGTGTACAAGTCTACGAAC 114519
Query 269251 CCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGT 269310
||||||| |||||||||| ||||| |||| || ||||| ||||||||||| ||||||
Sbjct 114520 CCCTTCGACTTTATGGAAAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGT 114579
Query 269311 GTCAGCGACTATCA 269324
||| | ||||||||
Sbjct 114580 GTCGGTGACTATCA 114593
>seq461
Length=561
Score = 125 bits (138), Expect = 2e-23
Identities = 169/233 (73%), Gaps = 12/233 (5%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || | ||| | || ||| || ||||| || |||||||||
Sbjct 356 CCACCACGGAGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCG 297
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || | |||||||||| |||||||| |||||||||| | |||||| ||||||
Sbjct 296 AGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTG---GTCTGGG 240
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420
|||||||| || |||||||| || || |||||||| || || | || ||||
Sbjct 239 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTC--- 183
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | ||||| || || ||||||| || || || || ||||||||
Sbjct 182 TCCACCTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 130
Score = 113 bits (124), Expect = 1e-19
Identities = 142/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || || || || | || || |||||||| | ||||||||| ||||||
Sbjct 548 TCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGTTTTCCGGCGAAG 489
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||| | ||| || |||||| || || || |||||||| ||||| ||||||||
Sbjct 488 ATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTG 429
Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || | ||| ||| || || || | || ||||||||||| |||| |||||
Sbjct 428 TCAATGGTGTCGGAGCTC---TCCACCTCCAAAGTAATCGTCTTCCCTGTCAATGTCTTC 372
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 371 ACGAAAATCTGCAT 358
>seq5
Length=2272025
Score = 107 bits (118), Expect = 5e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336
||||| || || ||||| || |||||| || ||||| ||||| || | || || ||
Sbjct 1174682 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 1174741
Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396
|| ||||| || ||||| || ||||| || || || |||||||| || | ||
Sbjct 1174742 GCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1174801
Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456
|| || || || | ||| || || || || || |||||||||||||| || || |||
Sbjct 1174802 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTC 1174861
Query 288457 TTGACGAATATCTGCAT 288473
|||||||| ||||||||
Sbjct 1174862 TTGACGAAGATCTGCAT 1174878
>seq2
Length=4202288
Score = 105 bits (116), Expect = 2e-17
Identities = 156/220 (71%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || |||| || || || || | ||| ||| || || || || |||||||
Sbjct 1893447 CCACCACGAAGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAC 1893506
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || ||||| ||||| ||||||||||| || || |||
Sbjct 1893507 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTG---GTCCGGG 1893563
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || |||||||| || | ||||| || || || | ||| || ||
Sbjct 1893564 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAGGACTCA 1893623
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
|| || || ||||| ||||| || || || ||||||||||
Sbjct 1893624 ACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 1893663
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| || || ||||| | || || || || | ||| ||| || || || || ||||||
Sbjct 1893216 TGACCGCCACGGAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCG 1893275
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
|| ||||| ||||| || | || || || || ||||| |||||||| ||
Sbjct 1893276 CTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGG 1893335
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || ||||| || || | ||||| || || || | ||| || ||
Sbjct 1893336 GGGATACCCTCCTTGTCCTGAATCTTAGACTTCACATTGTCGATGGTATCAGATGACTCC 1893395
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || || ||||| || || | ||||||||||| || |||||
Sbjct 1893396 ACCTCCAGAGTAATGGTCTTTCCAGTTAAGGTCTTGACGAAGATTTGCAT 1893445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179646933524932
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |