Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq12 132 1e-25 seq5 89.7 1e-12 >seq12 Length=1358207 Score = 132 bits (146), Expect = 1e-25 Identities = 185/255 (73%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || | ||| |||||||| | || || |||| || | Sbjct 114358 ATCATCACCGATGCTGTCACTATCGAGAAGGAATTTCTCACTGAAGCGCTTCCCTGT-GC 114416 Query 243562 CTTATT-GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| | ||||||||||| || |||||| || || || || ||||||||||| || | Sbjct 114417 TTTACTCGGCATGAACTCCGATCTCATGAAGCAATATATTGAGTTCGTAGCCGATCGTCT 114476 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 | | | || || || ||||||| |||||||| || | ||||||||| | ||||||||| Sbjct 114477 TCTTGTTGCCCTCGGCAATGAGAAGGTGTACAAGTCTACGAACCCCTTCGACTTTATGGA 114536 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATC--AA 243738 |||||| || || || || ||||||||||| ||||||||| |||| |||| || Sbjct 114537 AAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTATCAGAA 114596 Query 243739 CGCCCTGGTGTGATG 243753 ||| ||||||||| Sbjct 114597 AGCC--GGTGTGATG 114609 >seq5 Length=2272025 Score = 89.7 bits (98), Expect = 1e-12 Identities = 172/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||||||| | | ||| | || ||||| ||| || ||||| || ||| | | || | Sbjct 1465510 AGTCAATGGTGGTCATCTCAGTATCGGCAGAGTCCAGGTCGTGCTCGACGAAGACGGTCT 1465451 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | | || || ||| |||||| | | ||| |||| ||||| ||||| || Sbjct 1465450 TGACTTCGCTCTGCTTGGGGAAACCCT-CGACCTGCTCGTTGTTGATAGCACGCATGAGG 1465392 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || || || || | ||||| || || || ||||||||||| | |||||||| ||| | Sbjct 1465391 GTGGACTTTCCAGAACCGTTGGGACCGCAAAGACCGTAGCGCTGACCACGCTTGAGACGG 1465332 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | | || | ||| |||||||| || |||| || || ||||| || ||| | || Sbjct 1465331 AGGTGAGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAA 1465272 Query 334344 AGATCCTCACC 334354 ||||||||||| Sbjct 1465271 AGATCCTCACC 1465261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873019458900