Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq5 116 4e-21
seq2 111 2e-19
seq461 91.5 1e-13
seq12 89.7 5e-13
>seq5
Length=2272025
Score = 116 bits (128), Expect = 4e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| || || ||||||||| || ||||| | | |
Sbjct 1174687 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAA 1174746
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541
||| || ||||| |||||||| || || || || ||||| ||| || || | |||
Sbjct 1174747 GATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 1174806
Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601
| || | |||||||| ||||||||||| | || | ||| || || || || || || |
Sbjct 1174807 G-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 1174865
Query 138602 CAAAAATCTGCAT 138614
| || ||||||||
Sbjct 1174866 CGAAGATCTGCAT 1174878
>seq2
Length=4202288
Score = 111 bits (122), Expect = 2e-19
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || | || | | | || ||||| ||||||||||||||||||
Sbjct 1893219 CCGCCACGGAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTC 1893278
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||| || ||||| | | |||| |||||||| |||||||| ||
Sbjct 1893279 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGG 1893338
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || ||||| ||| | || | || |||| || | ||| || | |||||||
Sbjct 1893339 ATACCCTCCTTGTC-CTGAATCTTAGACTTCACATTG-TCGATGGTATCAGATGACTCCA 1893396
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||| | || || || || || |||||
Sbjct 1893397 CCTCCAGAGTAATGGTCTTTCCAGTTAAGGTCTTGACGAAGATTTGCAT 1893445
Score = 93.3 bits (102), Expect = 4e-14
Identities = 132/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| ||||||||||||||| || ||| || ||||||||| || || ||||
Sbjct 1893480 GATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCG 1893539
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
| || |||||||| |||||||| || || || || ||||| ||| || || | |
Sbjct 1893540 AAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACA 1893599
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| ||||| ||||| | || | || || ||||| || || ||
Sbjct 1893600 TTG-TCGATGGTGTCGGAGGACTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTT 1893658
Query 138600 TAC 138602
||
Sbjct 1893659 GAC 1893661
Score = 84.2 bits (92), Expect = 2e-11
Identities = 131/184 (71%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | ||| | || | | | |||||||| || ||||||||||||
Sbjct 1893731 CCACCACGGAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1893790
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||| || || ||||| | | |||| |||||||| |||||||| ||
Sbjct 1893791 AGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGA 1893850
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| | || | || | ||| || | |||||||| ||||| |
Sbjct 1893851 ATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGAGGACTCGA 1893908
Query 138566 CCTC 138569
||||
Sbjct 1893909 CCTC 1893912
>seq461
Length=561
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||| | | |||| ||||| || ||||||||||||
Sbjct 356 CCACCACGGAGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCG 297
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || | ||| || || ||||| |||| |||| | | ||||||||| || ||
Sbjct 296 AGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGA 237
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| || || | | || | |||||||| |||||||
Sbjct 236 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACC 177
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| | || | ||||| || |||| ||||| ||||| |||||||||
Sbjct 176 TCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCATG 129
>seq12
Length=1358207
Score = 89.7 bits (98), Expect = 5e-13
Identities = 333/512 (65%), Gaps = 25/512 (5%)
Strand=Plus/Plus
Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-CCACGCTGGCCGAGCG 52399
|| |||||| |||||||| || ||||||| || | | | |||| | || | ||
Sbjct 114097 AAGAAGGCTGAGTGGGCATTGCGGTGGATCTC-AGACAAGCAGTCCACCTTCGCTCAACG 114155
Query 52400 CATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTT 52459
| | || ||||| || ||| |||||| | || || || ||||| |||||||
Sbjct 114156 CCTTGTTGCCTTTGCTGCAGTAGAGGGCATCTTCTTCAGTGGTGCTTTTGCTTCCATCTT 114215
Query 52460 TTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCG 52519
| | || | | ||| | ||||| || |||| ||| ||||| |||| || ||
Sbjct 114216 CTGGCTCAAGAAGCGCGGCCTCATGCCTGGTTTGACCTTCTCAAACGAACTGATCTCCCG 114275
Query 52520 CGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACT---ACAAGACGCGC-GTGA 52572
|| || || |||||||| ||||| || ||||| | ||| || | | || |||
Sbjct 114276 TGATGAGGGCCTGCACACCGACTTCGCTTGCCTGCTCCACTCTCACCTTAAGGGCCGTGC 114335
Query 52573 CCGAAA--AATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630
| | || || || |||| | ||| || ||| || || || |||||||
Sbjct 114336 CAGCAAGCAAGTG-ATTCAG----GAT-------ATCATCACCGATGCTGTCACTATCGA 114383
Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCAT 52690
||||| ||| | || | ||||| || | | || ||||||||| | | |||
Sbjct 114384 GAAGGAATTTCTCACTGAAGCGCTTCCCTGTGCTTTACTCGGCATGAACTCCGATCTCAT 114443
Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGGCAGCCAAAGT 52749
| | || || ||||| || || |||||||| ||| ||| ||||| | |||
Sbjct 114444 GAAGCAATATATTGAGTTCGTAGCCGATCGTCTTCTTGTTGCC-CTCGGCAATGAGAAGG 114502
Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809
| ||| || || || || || |||||| | |||||||| || | ||||||||||
Sbjct 114503 TGTACAAGTCTACGAACCCCTTCGACTTTATGGAAAACATTTCTCTCGGTGGCAAGACCA 114562
Query 52810 ACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841
|||| ||||||||||| ||||| || ||| ||
Sbjct 114563 ACTTCTTCGAGAAGCGTGTCGGTGACTATCAG 114594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496259335579680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |