Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5 116 4e-21 seq2 111 2e-19 seq461 91.5 1e-13 seq12 89.7 5e-13 >seq5 Length=2272025 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || ||||||||| || ||||| | | | Sbjct 1174687 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAA 1174746 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| || ||||| |||||||| || || || || ||||| ||| || || | ||| Sbjct 1174747 GATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 1174806 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | |||||||| ||||||||||| | || | ||| || || || || || || | Sbjct 1174807 G-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 1174865 Query 138602 CAAAAATCTGCAT 138614 | || |||||||| Sbjct 1174866 CGAAGATCTGCAT 1174878 >seq2 Length=4202288 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | || ||||| |||||||||||||||||| Sbjct 1893219 CCGCCACGGAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTC 1893278 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || ||||| | | |||| |||||||| |||||||| || Sbjct 1893279 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGG 1893338 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || |||| || | ||| || | ||||||| Sbjct 1893339 ATACCCTCCTTGTC-CTGAATCTTAGACTTCACATTG-TCGATGGTATCAGATGACTCCA 1893396 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| | || || || || || ||||| Sbjct 1893397 CCTCCAGAGTAATGGTCTTTCCAGTTAAGGTCTTGACGAAGATTTGCAT 1893445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||||||| || ||| || ||||||||| || || |||| Sbjct 1893480 GATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCG 1893539 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || |||||||| |||||||| || || || || ||||| ||| || || | | Sbjct 1893540 AAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACA 1893599 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||| ||||| | || | || || ||||| || || || Sbjct 1893600 TTG-TCGATGGTGTCGGAGGACTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTT 1893658 Query 138600 TAC 138602 || Sbjct 1893659 GAC 1893661 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | || | | | |||||||| || |||||||||||| Sbjct 1893731 CCACCACGGAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1893790 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || ||||| | | |||| |||||||| |||||||| || Sbjct 1893791 AGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGA 1893850 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | |||||||| ||||| | Sbjct 1893851 ATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGAGGACTCGA 1893908 Query 138566 CCTC 138569 |||| Sbjct 1893909 CCTC 1893912 >seq461 Length=561 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | |||| ||||| || |||||||||||| Sbjct 356 CCACCACGGAGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCG 297 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || || ||||| |||| |||| | | ||||||||| || || Sbjct 296 AGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGA 237 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | |||||||| ||||||| Sbjct 236 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACC 177 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||| || |||| ||||| ||||| ||||||||| Sbjct 176 TCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCATG 129 >seq12 Length=1358207 Score = 89.7 bits (98), Expect = 5e-13 Identities = 333/512 (65%), Gaps = 25/512 (5%) Strand=Plus/Plus Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-CCACGCTGGCCGAGCG 52399 || |||||| |||||||| || ||||||| || | | | |||| | || | || Sbjct 114097 AAGAAGGCTGAGTGGGCATTGCGGTGGATCTC-AGACAAGCAGTCCACCTTCGCTCAACG 114155 Query 52400 CATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTT 52459 | | || ||||| || ||| |||||| | || || || ||||| ||||||| Sbjct 114156 CCTTGTTGCCTTTGCTGCAGTAGAGGGCATCTTCTTCAGTGGTGCTTTTGCTTCCATCTT 114215 Query 52460 TTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCG 52519 | | || | | ||| | ||||| || |||| ||| ||||| |||| || || Sbjct 114216 CTGGCTCAAGAAGCGCGGCCTCATGCCTGGTTTGACCTTCTCAAACGAACTGATCTCCCG 114275 Query 52520 CGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACT---ACAAGACGCGC-GTGA 52572 || || || |||||||| ||||| || ||||| | ||| || | | || ||| Sbjct 114276 TGATGAGGGCCTGCACACCGACTTCGCTTGCCTGCTCCACTCTCACCTTAAGGGCCGTGC 114335 Query 52573 CCGAAA--AATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630 | | || || || |||| | ||| || ||| || || || ||||||| Sbjct 114336 CAGCAAGCAAGTG-ATTCAG----GAT-------ATCATCACCGATGCTGTCACTATCGA 114383 Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCAT 52690 ||||| ||| | || | ||||| || | | || ||||||||| | | ||| Sbjct 114384 GAAGGAATTTCTCACTGAAGCGCTTCCCTGTGCTTTACTCGGCATGAACTCCGATCTCAT 114443 Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGGCAGCCAAAGT 52749 | | || || ||||| || || |||||||| ||| ||| ||||| | ||| Sbjct 114444 GAAGCAATATATTGAGTTCGTAGCCGATCGTCTTCTTGTTGCC-CTCGGCAATGAGAAGG 114502 Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809 | ||| || || || || || |||||| | |||||||| || | |||||||||| Sbjct 114503 TGTACAAGTCTACGAACCCCTTCGACTTTATGGAAAACATTTCTCTCGGTGGCAAGACCA 114562 Query 52810 ACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 |||| ||||||||||| ||||| || ||| || Sbjct 114563 ACTTCTTCGAGAAGCGTGTCGGTGACTATCAG 114594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259335579680