Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq461 122 8e-23 seq5 104 2e-17 seq12 98.7 9e-16 seq4 98.7 9e-16 seq8 91.5 1e-13 seq2 82.4 7e-11 >seq461 Length=561 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || || || || || || ||||| ||| | Sbjct 356 CCACCACGGAGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCG 297 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | || |||||||||||||| ||| ||||||||| ||| || || || || Sbjct 296 AGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGA 237 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| || ||| | |||| |||| |||||| | ||||| || Sbjct 236 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTG-TCGATGGTGTCGGAGCTCTCCAC 178 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||||| ||||||| ||||| ||||| ||||||||| Sbjct 177 CTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCATG 129 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || |||||||| ||| || || || || || |||||||| Sbjct 555 CGTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGTTTTCC 496 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| ||||||| | |||||| || || || || |||||||||||| ||| ||| ||| Sbjct 495 GGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTCGCCTT 436 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | ||||| | | |||||| | ||||| || || | || | ||| || || |||| | Sbjct 435 CACGTTGT-CAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTGTCAATG 377 Query 127095 TTTTTACAAAAATCTGCAT 127113 | || || ||||||||||| Sbjct 376 TCTTCACGAAAATCTGCAT 358 >seq5 Length=2272025 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||||| || | || ||| || || || ||||| ||| Sbjct 1174649 GCACCACCACGCAGGCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 1174708 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || ||||| || || ||||| || ||||| |||| | ||||||||| || || Sbjct 1174709 CTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGG 1174768 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| Sbjct 1174769 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 1174828 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||| || || || || || || || || |||||||| Sbjct 1174829 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1174878 >seq12 Length=1358207 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412 |||| || ||| | || |||| ||| ||| || | || || || ||| ||||| | | Sbjct 114365 CCGATGCTGTCACTATCGAGAAGGAATTTCTCACTGAAGCGCTTCCCTGTGCTTTACTCG 114424 Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472 | |||||| | || | |||| | || || || || || ||||| || || || ||| Sbjct 114425 GCATGAACTCCGATCTCATGAAGCAATATATTGAGTTCGTAGCCGATCGTCTTCTTGTTG 114484 Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 || || ||| | ||| | | ||| || ||||| |||||| | ||||||| Sbjct 114485 CCCTCGGCAATGAGAAGGTGTACAAGTCTACGAACCCCTTCGACTTTATGGAAAACATTT 114544 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579 | |||| |||||||||||||| ||||||||||| ||||| || ||| Sbjct 114545 CTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTAT 114591 >seq4 Length=2550084 Score = 98.7 bits (108), Expect = 9e-16 Identities = 222/327 (68%), Gaps = 10/327 (3%) Strand=Plus/Minus Query 145867 TGATCAATGAAAGGAGCC-CGGTCGGCGGCCATGT---CTATCATGCACTTTGATTTAAT 145922 || |||||||| || ||| |||||||| ||||| | | | | || || || ||| Sbjct 817737 TGGTCAATGAA-GGCGCCTCGGTCGGCAGCCATCTGGACGACCTGGCGCTGGGA---AAT 817682 Query 145923 TTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCAC 145982 ||||| |||| || ||||| |||| || | | ||| || | | |||||||| | Sbjct 817681 CTCCCACACGGTCTTGTAGAGAGCCTTAACATCCGCGGGGATGTTGGGGATGTTCTGGAT 817622 Query 145983 AGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTAC 146042 || || | ||| || | ||| |||| || | | | | | || ||| || Sbjct 817621 GGAGCCGTCTTCAGCAATGATTCTGTTTTTCATAGCATCCGACCATAGGCCCATGTCAAC 817562 Query 146043 GAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAG 146102 ||| |||||| ||| | ||||||| ||||| ||||||||||| || || || | || Sbjct 817561 GAGATCCTTGAGGAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGACG-AG 817503 Query 146103 A-TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCG 146161 | || | |||| ||| | |||||||| ||||||||||||| || ||||| | || Sbjct 817502 AGTAGATGTTGGATGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGATGTAC 817443 Query 146162 TAGCGGTAGGCATGTACGCCACCAGCA 146188 |||| ||||||||| |||| |||| Sbjct 817442 TAGCAGTAGGCATGGGTGCCAGGAGCA 817416 >seq8 Length=1962940 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || || ||| ||||| Sbjct 146541 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 146482 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 146481 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 146422 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | |||||||| |||||| || | ||| | || ||||| || || || || || ||| Sbjct 146421 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 146362 >seq2 Length=4202288 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | || | || || || || ||||| ||||| ||| | Sbjct 1893447 CCACCACGAAGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAC 1893506 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| | |||| |||||||| || || || Sbjct 1893507 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGA 1893566 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| |||||| | ||| || Sbjct 1893567 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAGGACTCAACC 1893626 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | || | || ||||| || || || || || Sbjct 1893627 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 1893661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497863782560