Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq461 122 8e-23
seq5 104 2e-17
seq12 98.7 9e-16
seq4 98.7 9e-16
seq8 91.5 1e-13
seq2 82.4 7e-11
>seq461
Length=561
Score = 122 bits (134), Expect = 8e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||||| | || || || || || || ||||| ||| |
Sbjct 356 CCACCACGGAGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCG 297
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | || |||||||||||||| ||| ||||||||| ||| || || || ||
Sbjct 296 AGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGA 237
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || ||||||||| ||| || ||| | |||| |||| |||||| | ||||| ||
Sbjct 236 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTG-TCGATGGTGTCGGAGCTCTCCAC 178
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | ||||| ||||||| ||||| ||||| |||||||||
Sbjct 177 CTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCATG 129
Score = 109 bits (120), Expect = 5e-19
Identities = 145/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| || || || |||||||| ||| || || || || || ||||||||
Sbjct 555 CGTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGTTTTCC 496
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
||| ||||||| | |||||| || || || || |||||||||||| ||| ||| |||
Sbjct 495 GGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTCGCCTT 436
Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094
| ||||| | | |||||| | ||||| || || | || | ||| || || |||| |
Sbjct 435 CACGTTGT-CAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTGTCAATG 377
Query 127095 TTTTTACAAAAATCTGCAT 127113
| || || |||||||||||
Sbjct 376 TCTTCACGAAAATCTGCAT 358
>seq5
Length=2272025
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | || | ||||| || | || ||| || || || ||||| |||
Sbjct 1174649 GCACCACCACGCAGGCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 1174708
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| || ||||| || || ||||| || ||||| |||| | ||||||||| || ||
Sbjct 1174709 CTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGG 1174768
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| ||||||||||||||| ||| || ||||| | |||| |||||| | | |||
Sbjct 1174769 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 1174828
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||| | ||| || || || || || || || || ||||||||
Sbjct 1174829 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1174878
>seq12
Length=1358207
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412
|||| || ||| | || |||| ||| ||| || | || || || ||| ||||| | |
Sbjct 114365 CCGATGCTGTCACTATCGAGAAGGAATTTCTCACTGAAGCGCTTCCCTGTGCTTTACTCG 114424
Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472
| |||||| | || | |||| | || || || || || ||||| || || || |||
Sbjct 114425 GCATGAACTCCGATCTCATGAAGCAATATATTGAGTTCGTAGCCGATCGTCTTCTTGTTG 114484
Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532
|| || ||| | ||| | | ||| || ||||| |||||| | |||||||
Sbjct 114485 CCCTCGGCAATGAGAAGGTGTACAAGTCTACGAACCCCTTCGACTTTATGGAAAACATTT 114544
Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579
| |||| |||||||||||||| ||||||||||| ||||| || |||
Sbjct 114545 CTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTAT 114591
>seq4
Length=2550084
Score = 98.7 bits (108), Expect = 9e-16
Identities = 222/327 (68%), Gaps = 10/327 (3%)
Strand=Plus/Minus
Query 145867 TGATCAATGAAAGGAGCC-CGGTCGGCGGCCATGT---CTATCATGCACTTTGATTTAAT 145922
|| |||||||| || ||| |||||||| ||||| | | | | || || || |||
Sbjct 817737 TGGTCAATGAA-GGCGCCTCGGTCGGCAGCCATCTGGACGACCTGGCGCTGGGA---AAT 817682
Query 145923 TTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCAC 145982
||||| |||| || ||||| |||| || | | ||| || | | |||||||| |
Sbjct 817681 CTCCCACACGGTCTTGTAGAGAGCCTTAACATCCGCGGGGATGTTGGGGATGTTCTGGAT 817622
Query 145983 AGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTAC 146042
|| || | ||| || | ||| |||| || | | | | | || ||| ||
Sbjct 817621 GGAGCCGTCTTCAGCAATGATTCTGTTTTTCATAGCATCCGACCATAGGCCCATGTCAAC 817562
Query 146043 GAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAG 146102
||| |||||| ||| | ||||||| ||||| ||||||||||| || || || | ||
Sbjct 817561 GAGATCCTTGAGGAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGACG-AG 817503
Query 146103 A-TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCG 146161
| || | |||| ||| | |||||||| ||||||||||||| || ||||| | ||
Sbjct 817502 AGTAGATGTTGGATGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGATGTAC 817443
Query 146162 TAGCGGTAGGCATGTACGCCACCAGCA 146188
|||| ||||||||| |||| ||||
Sbjct 817442 TAGCAGTAGGCATGGGTGCCAGGAGCA 817416
>seq8
Length=1962940
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| ||| || ||||| || || ||| |||||
Sbjct 146541 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 146482
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| |||||||| || || || ||||||||||||||| ||| || ||||| | |||
Sbjct 146481 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 146422
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| |||||||| |||||| || | ||| | || ||||| || || || || || |||
Sbjct 146421 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 146362
>seq2
Length=4202288
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| || | || | || || || || ||||| ||||| ||| |
Sbjct 1893447 CCACCACGAAGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAC 1893506
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| ||||| ||| | |||| |||||||| || || ||
Sbjct 1893507 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGA 1893566
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||| | | |||| |||||| | ||| ||
Sbjct 1893567 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAGGACTCAACC 1893626
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|| | || | || ||||| || || || || ||
Sbjct 1893627 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 1893661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475497863782560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |