Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 179 5e-40 seq12 102 1e-16 >seq4 Length=2550084 Score = 179 bits (198), Expect = 5e-40 Identities = 1128/1784 (63%), Gaps = 61/1784 (3%) Strand=Plus/Minus Query 115528 AACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCC 115587 || ||||||||| || ||||| | |||||||||||||| || |||||||| || Sbjct 817875 AATTGAATGGGTGCAGCAGCGGCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGACCA 817816 Query 115588 TGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAG 115647 |||||||| | | ||||| || | |||| | || || || |||| | Sbjct 817815 AGCTTCCAGCCGGTGAAGTGCATGCTGGTAATCTTGCCCATGGTGGGGTCTTTCATGTGG 817756 Query 115648 AGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACA 115707 | ||| | || ||||| || |||||| || || || || ||||| | | || Sbjct 817755 ATGTTGAGGGACTGAGATTGGTCAATGAAGGCGCCTCGGTCGGCAGCCATCTGGACGAC- 817697 Query 115708 TCCTTCATCTTG---ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 115764 || || | || |||||||| || ||||||| ||||| ||| | ||||| Sbjct 817696 --CTGGCGCTGGGAAATCTCCCACACGGTCTTGTAGAGAGCCTTAACATCCGCGGGGATG 817639 Query 115765 TCCACGATATTTTGGATAGAGCCACCT---GCCTTGACCATGAGATCCTTCATATCCTTT 115821 | ||| || ||||| ||||| || || ||| || | |||||| | | Sbjct 817638 TTGGGGATGTTCTGGATGGAGCCGTCTTCAGCAATGATTCTG---TTTTTCATAGCATCC 817582 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCA 115881 ||||| || || || | |||||||| | ||| |||||||| ||||| Sbjct 817581 GACCATAGGCCCATGTCAACGAGATCCTTGAGGAGCCAGGGGTTGACAACCTGGAACTCG 817522 Query 115882 CCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTT 115940 || || ||| || | ||| |||||||||| ||||| ||||| |||||||| ||||| Sbjct 817521 CCGGCAAGGACACGACG-AGAGTAGATGTTGGATGTGTAAGGCTCGAAGCACTCGTTGTT 817463 Query 115941 ACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAG 116000 ||||| ||| || | ||| || || ||||||||||||| ||| || |||||||||| Sbjct 817462 ACCCAGGATCTGAGATGTACTAGCAGTAGGCATGGGTGCCAGGAGCAGACTGTTGCGGAT 817403 Query 116001 ACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCT---TTGTCTC 116057 ||| | || | | | || ||| | |||||||| | ||||| | | Sbjct 817402 ACCGTGCTCCTTGACCTGCTCTCGGAGCGGCTCCCAGTCCCA---GAGCTCGGAAGGTTT 817346 Query 116058 CCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC 116117 | | | |||||| || ||||| |||||||||| || || || || |||| || || Sbjct 817345 CACGTTCCACATGTCGAACTGAAGGATACCTTCAGAGGCAGGAGAGCCCTTGAAGGTGGA 817286 Query 116118 ATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACAT 116174 || || ||||| ||| || | | |||| ||| | || |||||||| || Sbjct 817285 GTAGGGACCCTCCTCCTTGGCAAGCTGCACGGA---CGCAGTCAAAGCAGCGTGATAGAT 817229 Query 116175 TGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA 116234 |||||||| || | |||| | ||||| ||| ||||| | | ||| Sbjct 817228 AGTCTCAAAGATTTGTTTGTTCAGCTCACGAGCCTCAGGGGACTCAAAAGGCATGCGGAG 817169 Query 116235 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 || || |||| || ||||| |||||||||| || || || || || | ||| || Sbjct 817168 GGCAAGGAAGGCATCAGCAAGACCCTGGACACCGACACCGATGGGACGGTGGCGCATGTT 817109 Query 116295 AGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 || ||||| ||| || || ||| || ||| || | | | || || || Sbjct 817108 GCTGTTGCGAGC---CTCAGGAACAGGGTAATGGTTGACATCAATGATCTTGTTCAGGTT 817052 Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 116411 | |||| || || | || || | ||||| | | ||| ||| | | | Sbjct 817051 GCGGACGACAGTCTGGGTAACCTCGTGCAACTTTTGGAAGTCATAACAATCGTTGTTGTA 816992 Query 116412 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 116471 | || | ||| ||||| | || || || || || || | ||||| | Sbjct 816991 GTCAACGAATGAAGGCAGGGCCAGCGAGGCAAGGTTGCAGACGGCAACTTCATCAGGGGC 816932 Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531 |||| || || ||||| || |||| || || || ||| ||||| | |||||| || Sbjct 816931 GCTGTATTCGATGATTTCAGTGCACAGGTTGGAGCTGCGAATAGTGCCGAGGTTCTTCTG 816872 Query 116532 ATTTGACTTTGTGTT-ACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590 || ||| ||| || | ||||||||| ||||| | || | || ||||| || | Sbjct 816871 GTTGCTCTTGCGGTTGGCATG-ATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCAGTCT 816813 Query 116591 GGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCC 116649 | | | |||||||| | ||| | | || | ||| || ||| ||| || ||| Sbjct 816812 GAGCTTCAAGAATAGCGTACCAGAGCTTCTG-GGCCTTCA---TGGTCTTG---CGACCC 816760 Query 116650 T------CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGA 116702 | ||| ||| ||||| || | |||||||||||| || || ||| || | Sbjct 816759 TTACCGGCCTTCTCATACTTCTCATACAAGGCCTCAAACTCCTC-GCCGTAGCAATCGGC 816701 Query 116703 GAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 116762 || || || || || || || | ||||| ||| | ||| || ||| || ||||| Sbjct 816700 AAGGCCAGGGCACTCATTGGGGCACATGAGAGTCCAGTCACCGTTCTTCTCGACACGCTT 816641 Query 116763 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 116822 |||||| || || |||||||| ||||| ||| | ||| || || | ||||| | Sbjct 816640 CATGAACAGATCAGGGATCCATAGCGCGAGGAACAAATCACGGGCTCGGACCTCTTCCTT 816581 Query 116823 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 116882 || || || || | || | || || | || ||| |||||||| || || ||||| Sbjct 816580 TCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTA 816521 Query 116883 CACCGCGATTG-ACC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGT 116938 | |||| | ||| | || | | ||| |||||| || |||| || || || Sbjct 816520 GATGGCGAAAGCACCGGGTCGCTTGTTG-CCACCCTGGTCCACGTACCGAGCAGTGTTGT 816462 Query 116939 TAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACG 116996 | || || |||||||| || ||| ||||| || ||||| || || || || | Sbjct 816461 TGAAGACACGAAGCATGGGGGTGACACCATTGGAGGTACCATTGGTACCGGCAATGTATG 816402 Query 116997 AGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGAT 117056 | || ||| || | || ||||| || | ||| || || || ||| ||| ||||| Sbjct 816401 A-ACCGGTT-GCGCGGATTCGGTGGACGTTGAGACCGATGCCACCAGCCATCTTGGAGAT 816344 Query 117057 TTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGAT 117116 || ||| | |||| || ||||||| || || || ||| |||| | | | Sbjct 816343 CATGGCACACGTCTTGAGGGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATGTCAAC 816284 Query 117117 GAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGC 117176 | |||||| || | || ||| || |||||||||||||||||||| || | || Sbjct 816283 CAAGAAGCATGAAGATAGCTGGGGCTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGC 816224 Query 117177 GTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTT 117235 |||| | || | || | |||||| | ||||||||| | |||| ||||| | Sbjct 816223 GTGGGT-AAAAAACTTCATGGACATGAGGTTGTAGGTCTCGAGGACACGCTCGATGTCAT 816165 Query 117236 CCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 | || ||||| | ||||| ||||| | ||||| || ||| Sbjct 816164 CACCCCAGATACCCACAGAGACACGCATGATCATGTGCTGTGGT 816121 >seq12 Length=1358207 Score = 102 bits (112), Expect = 1e-16 Identities = 165/231 (71%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || ||||| ||||||||||| ||||| || |||||| || ||| |||||||| || Sbjct 114291 GTGCAGGCCCTCATCACGGGAGATCAGTTCGTTTGAGAAGGTCAAACCAGGCATGAGGCC 114232 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | | ||| | ||| ||||||||| ||||| || Sbjct 114231 GCGCTTCTTGAGCCAGAAGATGGAAGCAAAAGCACCACTGAAGAAGATGCCCTCTACTGC 114172 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGTATCA-AACCACTTCAT 127707 || || |||| || || | || |||| ||||| |||| | | | |||| || Sbjct 114171 AGCAAAGGCAACAAGGCGTTGAGCGAAGG---TGGACTGCTTGTCTGAGATCCACCGCAA 114115 Query 127708 CGCCCACTGTGCCTT-TTTCTCGATACATGGGAC--GGTCTGGATCGCTTC 127755 ||||||| ||||| ||||| ||| || || || | |||| | ||||| Sbjct 114114 TGCCCACTCAGCCTTCTTTCT-GATGCAAGGAACTGGACCTGGTTAGCTTC 114065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503411593040