Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 143 4e-29 seq12 116 6e-21 >seq4 Length=2550084 Score = 143 bits (158), Expect = 4e-29 Identities = 460/694 (66%), Gaps = 46/694 (7%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900 || || || || ||||||| || || | || |||||| | | || ||||||||||||| Sbjct 817884 TCGACAGTAAATTGAATGG-GTGCAGCAGC-GGCCTGGGTACGGAGGTAGTACATGCCGG 817827 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || || || ||| ||| | ||||||| | | |||| || | |||||| Sbjct 817826 TCTTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCTGGTAATCTTGCCCATGGTGGGGT 817767 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 | |||||| ||||| || ||||| |||||| ||||| |||||| || || || ||| Sbjct 817766 CTTTCATGTGGATGTTGAGGGACTGAGATTGGTCAATGAA-GGCGCCTCGGTCGGCAGCC 817708 Query 204020 ATATTGATAA--TGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACAC-GTCT------ 204070 || | || | ||| ||| |||||||||||||| |||||| | | | || Sbjct 817707 ATCTGGACGACCTGGCG--CTGGGAAATCTCCCACACGGTCTTGTAGAGAGCCTTAACAT 817650 Query 204071 ---CTGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGT 204127 | || ||||| || || ||| ||| ||||||| || || || | | Sbjct 817649 CCGCGGGGATGTTGGGG---ATGTTCTG-------GATGGAGCCGTCTTCAGCAATGATT 817600 Query 204128 CTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGG 204187 || | || | | ||| ||| | ||||| | || ||| | || |||| Sbjct 817599 CTGTTTTTCATAGCATCCGACCATAGGCCCATGTCAACGAGATCCTTGAGGAGCCAGGGG 817540 Query 204188 TTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGT 204247 |||| | ||| || || |||| || || | || | | | | |||| ||| | || Sbjct 817539 TTGACAACCTGGAACTCGCCGGCAAGGACACGACGAGAGTAGATGTTGGATGTGTAAGGC 817480 Query 204248 TCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGG 204307 ||||| ||||||||| || | ||||||| || || || || |||||||| |||||| Sbjct 817479 TCGAAGCACTCGTTGTTACCCAGGATCTGAGATGTACTAGCAGTAGGCATGGGTGCCAGG 817420 Query 204308 AGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGG--TCCAGTCGT 204365 ||||| |||||| | ||||| | | || ||||| | || ||| || |||||| Sbjct 817419 AGCAGACTGTTGCGGATACCGTGCTCCTTGA-CCTGCTC-TCGGAGCGGCTCCCAGTC-- 817364 Query 204366 GCATCGCACTG--GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423 || || | | ||||||||| ||||||||||||||||| ||| |||| | | | || Sbjct 817363 CCAGAGCTCGGAAGGTTTCACGTTCCACATGTCGAACTGAAGGATACCTTCAGAGGCAGG 817304 Query 204424 GCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCAC-GAGGCGGCCA 204482 ||||||| | || | || || ||||| | || ||| ||||| || || | || Sbjct 817303 AGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCAAGC-TGCACGGACGCAGTCA 817245 Query 204483 ---TGGCGTGATAGTACATGGTCTCAAAGATCTG 204513 ||||||||| || ||||||||||| || Sbjct 817244 AAGCAGCGTGATAG---ATAGTCTCAAAGATTTG 817214 >seq12 Length=1358207 Score = 116 bits (128), Expect = 6e-21 Identities = 331/500 (66%), Gaps = 13/500 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| | | || || |||||| || |||| ||||| Sbjct 114576 CTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTTTCCATAAAGTCGAAGGGGTT 114517 Query 159709 CTTC-ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 | | || || || |||| | ||||| || | || | | || || || || | Sbjct 114516 CGTAGACTTG-TACACCTTCTCATTGCCGAGGGCAACAAGAAGACGATCGGCTACGAACT 114458 Query 159768 CGATGTA--GCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTC 159825 | || || ||| || | | || |||| || || || | | ||| |||||||| Sbjct 114457 CAATATATTGCTTCA--TGAGATCGGAGTTCATGCCGAGTAAAGCACAGGGAAGCGCTTC 114400 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGC-GAGACACGTTCGT 159884 | ||||| |||||||| || ||| || ||||| | || | | || ||| | | | Sbjct 114399 AGTGAGAAATTCCTTCTCGATAGTGACAGCATCGGTGATGATATCCTGAATCACTTGCTT 114340 Query 159885 ACCCCGGCTTG-CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 | ||| | ||| || ||| | | |||| || || |||||| |||||| Sbjct 114339 GCT--GGCACGGCCCTTAAGGTGAGAGTGGAGCAGG---CAAGCGAAGTCGGTGTGCAGG 114285 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 ||||| || || ||||| | ||||| || | | | | || ||||||| || ||| Sbjct 114284 CCCTCATCACGGGAGATCAGTTCGTTTGAGAAGGTCAAACCAGGCATGAGGCCGCGCTTC 114225 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 |||||||| || |||| ||||||||||| || || ||||| ||||| || || ||||| Sbjct 114224 TTGAGCCAGAAGATGGAAGCAAAAGCACCACTGAAGAAGATGCCCTCTACTGCAGCAAAG 114165 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 || || || | | | | || | || | |||| | |||||| ||||| ||| Sbjct 114164 GCAACAAGGCGTTGAGCGAAGGTGGACTGCTTGTCTGAGATCCACCGCAATGCCCACTCA 114105 Query 160124 GCCTTCTTTGCGATGCACGG 160143 ||||||||| |||||| || Sbjct 114104 GCCTTCTTTCTGATGCAAGG 114085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795150289916640