Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2 143 6e-29 seq461 129 1e-24 seq8 107 5e-18 seq5 102 2e-16 >seq2 Length=4202288 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| ||||||||||||||| || || ||||| || | ||||||||| | || ||| Sbjct 1893453 CGAAGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTG 1893512 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || ||||||||||||||||| || ||||||||||||||||| ||| || Sbjct 1893513 CGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCC 1893572 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| |||||| | | || || || | Sbjct 1893573 TCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCAAGA 1893632 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||||| ||||| || ||||| || || || Sbjct 1893633 GTGATGGTCTTGCCAGTGAGGGTCTTGAC 1893661 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| ||||||||| | | || | || || Sbjct 1893746 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 1893805 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| ||||||||||||||||| ||| || || ||| Sbjct 1893806 TCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 1893865 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 1893866 TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTC 1893925 Query 199598 TTACCCGTGA 199607 || ||||||| Sbjct 1893926 TTGCCCGTGA 1893935 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| || || ||||| || | ||||||||| || || | || || Sbjct 1893234 AGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCGTCC 1893293 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| ||||||||||||||||| || || || ||| Sbjct 1893294 TCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 1893353 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| |||| ||| || | || || || |||| || || ||| Sbjct 1893354 TGAATCTTAGACTTCACATTGTCGATGGTATCAGATGACTCCACCTCCAGAGTAATGGTC 1893413 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || ||||| Sbjct 1893414 TTTCCAGTTAAGGTCTTGACGAAGATTTG 1893442 >seq461 Length=561 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||| || || ||||| |||| ||||||||| || | || || || ||| Sbjct 341 AGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCT 282 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| |||||||||||||| | | ||| ||||| || ||||||||| ||| Sbjct 281 TCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCC 222 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || ||||| ||||| || Sbjct 221 TGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTT 162 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||||||||| || || Sbjct 161 TTTCCGGTCAAGGTTTTCACAAAGATCTG 133 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || ||||||||||| |||| |||||| || |||||||||| || ||||| || || Sbjct 561 GTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTG 502 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||||||||||| | | ||||||||| || || || || ||||| ||||| Sbjct 501 TTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTT 442 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||||||| || | |||||| | | || || ||||| || |||||||| || || Sbjct 441 CGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTGT 382 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || ||||| ||||| || Sbjct 381 CAATGTCTTCACGAAAATCTG 361 >seq8 Length=1962940 Score = 107 bits (118), Expect = 5e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | ||||| || |||||||| |||||||||| Sbjct 146543 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 146484 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || |||||||||||||| ||| || || ||||| ||||| ||| || | Sbjct 146483 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 146424 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||| | | || || || | ||||| ||||| |||||||| || ||||| | Sbjct 146423 CGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 146364 Query 199620 AA 199621 || Sbjct 146363 AA 146362 >seq5 Length=2272025 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || |||||| |||| ||||||||| || || | || || Sbjct 1174667 AGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCC 1174726 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || |||||||||||||| || || || ||| Sbjct 1174727 TCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 1174786 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||||||| Sbjct 1174787 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 1174846 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || Sbjct 1174847 TTCCCCGTGAGGGTCTTGACGAAGATCTG 1174875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178914138163098