Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 122 1e-22 seq8 120 3e-22 seq2 116 4e-21 seq461 107 2e-18 >seq5 Length=2272025 Score = 122 bits (134), Expect = 1e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| ||||||||| || ||||| |||| ||||||||||| || Sbjct 1174682 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 1174741 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || || | ||||||||||| | || | || |||||||||| |||||| |||| Sbjct 1174742 GCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1174801 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| || ||||| || | ||||| || || ||||| || || Sbjct 1174802 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTC 1174861 Query 46577 TTAACAAAGATTTGCATTTTGC 46598 || || ||||| ||||| |||| Sbjct 1174862 TTGACGAAGATCTGCATCTTGC 1174883 >seq8 Length=1962940 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || ||||| | || || ||||||||||||||||| | Sbjct 146543 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 146484 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 146483 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 146424 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| |||||||| || || || || | Sbjct 146423 CGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 146364 Query 46584 A 46584 | Sbjct 146363 A 146363 >seq2 Length=4202288 Score = 116 bits (128), Expect = 4e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||||||| |||||||| |||| ||||||||||| |||||||| Sbjct 1893483 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAA 1893542 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||||| | || | || |||||||||| |||||| ||| | | Sbjct 1893543 ATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTG 1893602 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || || | |||||||| ||||| || || || || || Sbjct 1893603 TCGATGGTGTCGGAGGACTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 1893661 Score = 100 bits (110), Expect = 3e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || |||| || |||||||| || || || Sbjct 1893766 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAA 1893825 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||||| ||||| ||||| ||| Sbjct 1893826 GATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 1893884 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | |||||| || || || || | |||||||| |||||||| Sbjct 1893885 TGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGT 1893933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||||| || ||||| |||| ||||||||||| || || || Sbjct 1893255 TCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAG 1893314 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | | |||||||||| ||||| ||| | | Sbjct 1893315 ATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTAGACTTCACATTG 1893374 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || || ||||| |||| || ||||| || || || | || || || Sbjct 1893375 TCGATGGTATCAGATGACTCCACCTCCAGAGTAATGGTCTTTCCAGTTAAGGTCTTGACG 1893434 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 1893435 AAGATTTGCAT 1893445 >seq461 Length=561 Score = 107 bits (118), Expect = 2e-18 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| || || | |||| || ||||| || |||||||| Sbjct 320 TCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAG 261 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||| ||||| | || | | ||||||||| |||||| ||| | ||| Sbjct 260 ATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTT 202 Query 46523 GCC-ACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | |||||| ||| ||||| |||| ||||||||||| || |||| ||||| Sbjct 201 GTCGATGGTGTCGGAGCTC---TCCACCTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTT 145 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 144 CACAAAGATCTGCAT 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234909652880