Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq5 122 1e-22
seq8 120 3e-22
seq2 116 4e-21
seq461 107 2e-18
>seq5
Length=2272025
Score = 122 bits (134), Expect = 1e-22
Identities = 148/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456
|| |||||||| ||||| ||||||||| || ||||| |||| ||||||||||| ||
Sbjct 1174682 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 1174741
Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516
|| || || | ||||||||||| | || | || |||||||||| |||||| ||||
Sbjct 1174742 GCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1174801
Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576
| | | | |||||| || ||||| || | ||||| || || ||||| || ||
Sbjct 1174802 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTC 1174861
Query 46577 TTAACAAAGATTTGCATTTTGC 46598
|| || ||||| ||||| ||||
Sbjct 1174862 TTGACGAAGATCTGCATCTTGC 1174883
>seq8
Length=1962940
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| | || || ||||||||||||||||| |
Sbjct 146543 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 146484
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| |||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 146483 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 146424
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| || || || || | |||||||| |||||||| || || || || |
Sbjct 146423 CGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 146364
Query 46584 A 46584
|
Sbjct 146363 A 146363
>seq2
Length=4202288
Score = 116 bits (128), Expect = 4e-21
Identities = 133/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| || || ||||||||||| |||||||| |||| ||||||||||| ||||||||
Sbjct 1893483 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAA 1893542
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|||| ||||||||||| | || | || |||||||||| |||||| ||| | |
Sbjct 1893543 ATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTG 1893602
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || || || || | |||||||| ||||| || || || || ||
Sbjct 1893603 TCGATGGTGTCGGAGGACTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 1893661
Score = 100 bits (110), Expect = 3e-16
Identities = 125/169 (74%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || || || |||| || |||||||| || || ||
Sbjct 1893766 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAA 1893825
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | || |||||||||| ||||| ||||| |||
Sbjct 1893826 GATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 1893884
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | |||||| || || || || | |||||||| ||||||||
Sbjct 1893885 TGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGT 1893933
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| || || ||||||||| || ||||| |||| ||||||||||| || || ||
Sbjct 1893255 TCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAG 1893314
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | ||||||||||| | || | | |||||||||| ||||| ||| | |
Sbjct 1893315 ATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTAGACTTCACATTG 1893374
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | || || || ||||| |||| || ||||| || || || | || || ||
Sbjct 1893375 TCGATGGTATCAGATGACTCCACCTCCAGAGTAATGGTCTTTCCAGTTAAGGTCTTGACG 1893434
Query 46583 AAGATTTGCAT 46593
|||||||||||
Sbjct 1893435 AAGATTTGCAT 1893445
>seq461
Length=561
Score = 107 bits (118), Expect = 2e-18
Identities = 143/195 (73%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||||| || || | |||| || ||||| || ||||||||
Sbjct 320 TCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAG 261
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| | ||| ||||| | || | | ||||||||| |||||| ||| | |||
Sbjct 260 ATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTT 202
Query 46523 GCC-ACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | | |||||| ||| ||||| |||| ||||||||||| || |||| |||||
Sbjct 201 GTCGATGGTGTCGGAGCTC---TCCACCTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTT 145
Query 46579 AACAAAGATTTGCAT 46593
|||||||| |||||
Sbjct 144 CACAAAGATCTGCAT 130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565234909652880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |