Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq12 163 3e-35 seq461 132 5e-26 seq8 123 2e-23 seq5 118 1e-21 seq2 113 5e-20 >seq12 Length=1358207 Score = 163 bits (180), Expect = 3e-35 Identities = 363/534 (68%), Gaps = 18/534 (3%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||| || ||| ||||| || || || ||||| || || || || || || | Sbjct 114609 CATCACACCGGCTTTCTGATAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 114550 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707 | |||||| |||||| || |||||||| | | ||||| ||| |||| Sbjct 114549 GAGAGAAATGTTTTCCATAAAGTCGAAGGGGTTCGTAGACTTGTACACCTTCTCATTGCC 114490 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 || || | || || || | ||||| |||||||| || |||||| |||| ||| | Sbjct 114489 GA---GGGCAACAAGAAGACGATCGGCTACGAACTCAATATATTGCTTCATGAGATCGGA 114433 Query 132768 ATTAAGTCCCAGCAGACGCACCGGCA-GCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | || || | | |||| || | ||||||| |||||||| | |||||| | || Sbjct 114432 GTTCATGCCGAGTAAA-GCACAGGGAAGCGCTTCAGTGAGAAATTCCTTCTCGATAGTGA 114374 Query 132827 CCGCGTCGGTGACGATTTCCCTAA-CGCGCGCC-GC--GCTCGGCCGTTGCACCAAATGC 132882 | || ||||||| ||| ||| || | | || || || ||||| || | || Sbjct 114373 CAGCATCGGTGATGATATCCTGAATCACTTGCTTGCTGGCACGGCCCTTA----AGGTGA 114318 Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 | | || |||||| |||||| |||| |||||| || | ||| || |||||||| Sbjct 114317 GAGTGGAGCAGGCAAGCGAAGTCGGTGTGCAGGCCCTCATCACGGGAGATCAGTTCGTTT 114258 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 ||| ||||| || |||||||||||||| || |||||||| || |||| || ||| Sbjct 114257 GAGAAGGTCAAACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAAGCAAAAGCA 114198 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-C 133061 || ||||||| |||||| || || || || || || ||||| | |||| |||| | Sbjct 114197 CCACTGAAGAAGATGCCCTCTACTGCAGCAAAGGCAACAAGGCGTTGAGCGAAGGTGGAC 114138 Query 133062 TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 | ||| || | |||||| |||| ||||| || ||||| | | ||| ||| || Sbjct 114137 TGCTTGTCT-GAGATCCACCGCAATGCCCACTCAGCCTTCTTTCTGATGCAAGG 114085 Score = 104 bits (114), Expect = 2e-17 Identities = 191/277 (69%), Gaps = 5/277 (2%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| || || | || ||||| | ||||||||| ||| || || Sbjct 113982 GTATGTGTCGATGAGCAGAGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 113923 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA-CGCTCGACCAGAT 133285 ||| || || || || ||||| | ||| ||||| | || ||| ||||||||||| | Sbjct 113922 GCCATAGAAACAACGGGCCTCCGGGATCTGAACTTCA-GCGCTAAATCGCTCGACCAGGT 113864 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | |||||||||||||| || ||||| || || || || | ||| | || Sbjct 113863 TCTCGTTGACGATGCCATCTGAAGCGGCAAAGAAAGCAAGAATGTGGGAAACAAAGAACT 113804 Query 133346 GCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||||| | |||| ||| | |||||| || |||||||| || || | |||| Sbjct 113803 GCTCGTCTGCATTCAGGCGGTTGTTCCAGTCATGCAAATCCTTGGAAAGATCAATTTCCT 113744 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| ||||| |||||| || |||||||| Sbjct 113743 CAGCAGTCCAGAACGAGGCCTCGTGCTTCTTGTACAT 113707 >seq461 Length=561 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || || |||||||||||| | || || ||| | || Sbjct 130 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCTTGGAGGTGGAGAGCTCC 189 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || ||||||||| | ||||| Sbjct 190 GACACCATCGACAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 248 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | | || | ||| || |||||||| || |||| | |||||| ||||||||| Sbjct 249 ACAGAGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCAGAACCCTCGCCGACTACAA 308 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || |||||||| || ||| Sbjct 309 CATCCAGAAGGAATCAACCCTCCATTTGGTCCTCCGT 345 >seq8 Length=1962940 Score = 123 bits (136), Expect = 2e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| ||||||||| | || |||||| || | |||| | | Sbjct 146363 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATC 146422 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||| ||||| || Sbjct 146423 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 146482 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | ||||||||| ||||||||||||||| ||| Sbjct 146483 ATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 146542 Query 38433 G 38433 | Sbjct 146543 G 146543 >seq5 Length=2272025 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 1174881 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1174822 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | || || |||| ||||| ||||| || ||| | ||| Sbjct 1174821 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 1174762 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || || || ||||| || |||| |||||||| | ||||||| Sbjct 1174761 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTAC 1174702 Query 38421 AACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| ||| || || || ||||| || || Sbjct 1174701 AACATCCAGAAGGAGAGC-ACCCTCCACTTGGTCCTCCG 1174664 >seq2 Length=4202288 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| |||||||| | || || ||| || |||||| | | Sbjct 1893663 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGACACCATCG 1893604 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || |||| ||||| ||||| |||||| | ||||| ||||| || | Sbjct 1893603 ACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGA 1893544 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 ||| ||| || || ||||| || |||| ||||| || |||||||||||| || |||| Sbjct 1893543 TTTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATTCAGAAGG 1893484 Query 38434 AAGCGACGCTGCATTTGGTGCTGCG 38458 || | || || || | || ||||| Sbjct 1893483 AATCCACCCTCCACCTTGTCCTGCG 1893459 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||||||||| |||||||| | || |||||| || |||||| | | | |||| | || Sbjct 1893935 TCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACG-TCAAG 1893877 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || || | ||||| ||||| |||||| | ||||| ||||| || || | || || Sbjct 1893876 TCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTTGCTGGT 1893817 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || |||| || |||||| ||||||||||||||| ||||| | || || Sbjct 1893816 AAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTC 1893757 Query 38445 CATTTGGTGCTGCGT 38459 || |||| || ||| Sbjct 1893756 CACCTGGTTCTCCGT 1893742 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || ||||| || | || || ||| | | Sbjct 1893445 ATGCAAATCTTCGTCAAGACCTTAACTGGAAAGACCATTACTCTGGAGGTGGAGTCATCT 1893386 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || || | ||||| ||||| || ||| | ||||| Sbjct 1893385 GATACCATCGACAATGTGAAGTCTAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAG 1893326 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || ||||| || |||| |||||||| | |||||||||| Sbjct 1893325 CAGCGTCTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTACAAC 1893266 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||| | || || || | || || ||| | | ||||| Sbjct 1893265 ATTCAGAAGGAATCCACCCTCCACCTTGTCCTCCGTCTCCGTGGCGG 1893219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169711432960