Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq12 163 3e-35
seq461 132 5e-26
seq8 123 2e-23
seq5 118 1e-21
seq2 113 5e-20
>seq12
Length=1358207
Score = 163 bits (180), Expect = 3e-35
Identities = 363/534 (68%), Gaps = 18/534 (3%)
Strand=Plus/Minus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
|||||| || ||| ||||| || || || ||||| || || || || || || |
Sbjct 114609 CATCACACCGGCTTTCTGATAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 114550
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707
| |||||| |||||| || |||||||| | | ||||| ||| ||||
Sbjct 114549 GAGAGAAATGTTTTCCATAAAGTCGAAGGGGTTCGTAGACTTGTACACCTTCTCATTGCC 114490
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767
|| || | || || || | ||||| |||||||| || |||||| |||| ||| |
Sbjct 114489 GA---GGGCAACAAGAAGACGATCGGCTACGAACTCAATATATTGCTTCATGAGATCGGA 114433
Query 132768 ATTAAGTCCCAGCAGACGCACCGGCA-GCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
|| | || || | | |||| || | ||||||| |||||||| | |||||| | ||
Sbjct 114432 GTTCATGCCGAGTAAA-GCACAGGGAAGCGCTTCAGTGAGAAATTCCTTCTCGATAGTGA 114374
Query 132827 CCGCGTCGGTGACGATTTCCCTAA-CGCGCGCC-GC--GCTCGGCCGTTGCACCAAATGC 132882
| || ||||||| ||| ||| || | | || || || ||||| || | ||
Sbjct 114373 CAGCATCGGTGATGATATCCTGAATCACTTGCTTGCTGGCACGGCCCTTA----AGGTGA 114318
Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942
| | || |||||| |||||| |||| |||||| || | ||| || ||||||||
Sbjct 114317 GAGTGGAGCAGGCAAGCGAAGTCGGTGTGCAGGCCCTCATCACGGGAGATCAGTTCGTTT 114258
Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002
||| ||||| || |||||||||||||| || |||||||| || |||| || |||
Sbjct 114257 GAGAAGGTCAAACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAAGCAAAAGCA 114198
Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-C 133061
|| ||||||| |||||| || || || || || || ||||| | |||| |||| |
Sbjct 114197 CCACTGAAGAAGATGCCCTCTACTGCAGCAAAGGCAACAAGGCGTTGAGCGAAGGTGGAC 114138
Query 133062 TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115
| ||| || | |||||| |||| ||||| || ||||| | | ||| ||| ||
Sbjct 114137 TGCTTGTCT-GAGATCCACCGCAATGCCCACTCAGCCTTCTTTCTGATGCAAGG 114085
Score = 104 bits (114), Expect = 2e-17
Identities = 191/277 (69%), Gaps = 5/277 (2%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| ||||||||||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 113982 GTATGTGTCGATGAGCAGAGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 113923
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA-CGCTCGACCAGAT 133285
||| || || || || ||||| | ||| ||||| | || ||| ||||||||||| |
Sbjct 113922 GCCATAGAAACAACGGGCCTCCGGGATCTGAACTTCA-GCGCTAAATCGCTCGACCAGGT 113864
Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345
| |||||||||||||| || ||||| || || || || | ||| | ||
Sbjct 113863 TCTCGTTGACGATGCCATCTGAAGCGGCAAAGAAAGCAAGAATGTGGGAAACAAAGAACT 113804
Query 133346 GCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402
|||||| | |||| ||| | |||||| || |||||||| || || | ||||
Sbjct 113803 GCTCGTCTGCATTCAGGCGGTTGTTCCAGTCATGCAAATCCTTGGAAAGATCAATTTCCT 113744
Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | ||||| ||||| |||||| || ||||||||
Sbjct 113743 CAGCAGTCCAGAACGAGGCCTCGTGCTTCTTGTACAT 113707
>seq461
Length=561
Score = 132 bits (146), Expect = 5e-26
Identities = 161/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| | || || |||||||||||| | || || ||| | ||
Sbjct 130 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCTTGGAGGTGGAGAGCTCC 189
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| || ||||||||| | |||||
Sbjct 190 GACACCATCGACAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 248
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||| | | || | ||| || |||||||| || |||| | |||||| |||||||||
Sbjct 249 ACAGAGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCAGAACCCTCGCCGACTACAA 308
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||| |||||| | || || |||||||| || |||
Sbjct 309 CATCCAGAAGGAATCAACCCTCCATTTGGTCCTCCGT 345
>seq8
Length=1962940
Score = 123 bits (136), Expect = 2e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || ||||||||||| ||||||||| | || |||||| || | |||| | |
Sbjct 146363 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATC 146422
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| |||||| | ||||| ||||| ||
Sbjct 146423 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 146482
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | ||||||||| ||||||||||||||| |||
Sbjct 146483 ATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 146542
Query 38433 G 38433
|
Sbjct 146543 G 146543
>seq5
Length=2272025
Score = 118 bits (130), Expect = 1e-21
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || || |||||| | || || ||| |
Sbjct 1174881 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1174822
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||||| | | | | | || || |||| ||||| ||||| || ||| | |||
Sbjct 1174821 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 1174762
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | || || || ||||| || |||| |||||||| | |||||||
Sbjct 1174761 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTAC 1174702
Query 38421 AACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
|||||||| ||||| ||| || || || ||||| || ||
Sbjct 1174701 AACATCCAGAAGGAGAGC-ACCCTCCACTTGGTCCTCCG 1174664
>seq2
Length=4202288
Score = 113 bits (124), Expect = 5e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| |||||||| | || || ||| || |||||| | |
Sbjct 1893663 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGACACCATCG 1893604
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || |||| ||||| ||||| |||||| | ||||| ||||| || |
Sbjct 1893603 ACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGA 1893544
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
||| ||| || || ||||| || |||| ||||| || |||||||||||| || ||||
Sbjct 1893543 TTTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATTCAGAAGG 1893484
Query 38434 AAGCGACGCTGCATTTGGTGCTGCG 38458
|| | || || || | || |||||
Sbjct 1893483 AATCCACCCTCCACCTTGTCCTGCG 1893459
Score = 111 bits (122), Expect = 2e-19
Identities = 143/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||||||||| |||||||| | || |||||| || |||||| | | | |||| | ||
Sbjct 1893935 TCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACG-TCAAG 1893877
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| || | ||||| ||||| |||||| | ||||| ||||| || || | || ||
Sbjct 1893876 TCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTTGCTGGT 1893817
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| ||||| || |||| || |||||| ||||||||||||||| ||||| | || ||
Sbjct 1893816 AAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTC 1893757
Query 38445 CATTTGGTGCTGCGT 38459
|| |||| || |||
Sbjct 1893756 CACCTGGTTCTCCGT 1893742
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || || || ||||| || | || || ||| | |
Sbjct 1893445 ATGCAAATCTTCGTCAAGACCTTAACTGGAAAGACCATTACTCTGGAGGTGGAGTCATCT 1893386
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || || | ||||| ||||| || ||| | |||||
Sbjct 1893385 GATACCATCGACAATGTGAAGTCTAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAG 1893326
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || || || ||||| || |||| |||||||| | ||||||||||
Sbjct 1893325 CAGCGTCTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTACAAC 1893266
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || |||||| | || || || | || || ||| | | |||||
Sbjct 1893265 ATTCAGAAGGAATCCACCCTCCACCTTGTCCTCCGTCTCCGTGGCGG 1893219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169711432960
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