Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 8e-15 seq461 86.0 4e-12 seq8 86.0 4e-12 >seq5 Length=2272025 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || ||||| ||||| ||||| ||| | || | || || Sbjct 1174670 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCG 1174729 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || ||||| |||||||| | || | ||||||||||| Sbjct 1174730 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 1174789 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| || | ||| || || | ||| || || Sbjct 1174790 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 1174845 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || |||||||| ||||| || ||||||||||| || Sbjct 1174846 CTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 1174881 >seq461 Length=561 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | ||| ||| | || || |||||||||||||| || Sbjct 321 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAA 262 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || || |||||| | || | || |||||||| ||||| || ||| Sbjct 261 GATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 202 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | ||| || || | ||| ||||||||||| || | || ||||| Sbjct 201 GTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCAC 142 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 141 AAAGATCTGCAT 130 >seq8 Length=1962940 Score = 86.0 bits (94), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| || ||| | || |||| || ||||| || ||||| || || Sbjct 146541 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 146482 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| ||||| ||||| || | Sbjct 146481 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT--T 146426 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || || ||| || || | ||| ||||| || |||||||| |||||||| Sbjct 146425 GTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCAC 146366 Query 34970 AAA 34972 || Sbjct 146365 GAA 146363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631645502832