Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4 365 8e-96 seq12 125 1e-23 >seq4 Length=2550084 Score = 365 bits (404), Expect = 8e-96 Identities = 1144/1750 (65%), Gaps = 70/1750 (4%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || ||||| || | || ||||||| |||| ||| || || ||||||||||||||||| Sbjct 817881 ACAGTAAATTGAATGGGTGCAGCAGCGGCCTGGGTACGGAGGTAGTACATGCCGGTCTTG 817822 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTC 212669 || || ||| ||||||| | |||||| |||| | | ||| | || | Sbjct 817821 AGACCAAGCTT---CCAGCCGGTGAAGTGCAT-GCTGGTAAT--CTTGCCC---ATGGTG 817771 Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729 |||| | | |||| | ||| ||||||||| ||||| ||||| | | | Sbjct 817770 GGGTCTTTCATGTGG---------ATGTTGAGGGACTGAGATTGGTCAATGAAGGCGCCT 817720 Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789 | ||| || ||||| | | || | | |||||| | |||||||||||||||| ||| Sbjct 817719 CGGTCGGCAGCCATCTGGACGACCTGGCGCTGGGAAATCTCCCACACGGTCTTGTAGAGA 817660 Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGC 212849 | || | ||| | |||| | |||||||||||| | || || || | ||||| Sbjct 817659 GCCTTAACATCCGCGGGGATGTTGGGGATGTTCTGGATGGAGCC-----GTCT--TCAGC 817607 Query 212850 -----TGCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAG 212902 | | | ||| | || ||| |||||| || | || ||||| || Sbjct 817606 AATGATTCTGTTTTTCATAGCATCCGACCATAGGCCCATGTCAACGAGATCCTTGAGGAG 817547 Query 212903 GTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGT 212962 |||||||| | |||||| || || | || || | | ||| | ||| || || Sbjct 817546 CCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGACGAGAGTAGATGTTGGATGT 817487 Query 212963 GTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGG 213022 ||| ||||||| || ||||||||| ||||| ||||| | || || || || |||||||| Sbjct 817486 GTAAGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGATGTACTAGCAGTAGGCATGGG 817427 Query 213023 AGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCA 213082 |||| || |||||||| | | |||||||| || | || ||| |||| Sbjct 817426 TGCCAGGAGCAGACTGTTGCGGATACCGTGCTCCTTGACCTGCTCTCGGAGCGGCTCCCA 817367 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 |||||| | || |||| ||||||||||||||||| ||||| | ||| || Sbjct 817366 GTCCCAGAGCTCGGA-AGGT--------TTCACGTTCCACATGTCGAACTGAAGGATACC 817316 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 || | || ||||| | | | ||||||||| || | ||||||||| |||| ||| Sbjct 817315 TTCAGAGGCAGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCAAGCT-GCA 817257 Query 213203 -GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261 |||||| || ||||||| ||||| || ||||| || | |||| |||| | Sbjct 817256 CGGACGCAGTCAAAGCAGCGTGATAGATAGTCTCAAAGATTTGTTTGTTCAGCTCACGAG 817197 Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321 |||| |||||| || ||||| | | |||| ||||||| || |||||||| | Sbjct 817196 CCTCAGGGGACTCAAAAGGCATGCGGAGGGCAAGGAAGGCATCAGCAAGACCCTGGACAC 817137 Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAG 213380 ||| |||||||| | ||| | || ||| ||| |||| ||| | |||||| | Sbjct 817136 CGACACCGATGGGACGGTGGCGCATGTTGCTGTTGCGAGC-CTCAGGAACAGGGTAATGG 817078 Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 ||| || ||||||||||| ||||||||| | | | ||| || | | || | Sbjct 817077 TTGACATCAATGATCTTGTTCAGGTTGCGGACGACAGTCTGGGTAACCTCGTGCAACTTT 817018 Query 213441 TCG---TGATTGAACA--CGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGG 213495 | | | || |||| ||| | ||| || || ||||||||| | || Sbjct 817017 TGGAAGTCAT--AACAATCGTTGTTGTAGTCA---ACGAATGAAGGCAGGGCCAGCGAGG 816963 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 | |||||||| ||||| || || | || | | |||| || ||||| || |||||||||| Sbjct 816962 CAAGGTTGCAGACGGCAACTTCATCAGGGGCGCTGTATTCGATGATTTCAGTGCACAGGT 816903 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGT 213615 || || || || ||||| ||||||| ||||| ||| ||||||| |||||||| Sbjct 816902 TGGAGCTGCGAATAGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCATGATCCTTGT 816843 Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACC 213675 | |||||| ||||| || ||||| ||| | | || || | |||||| | | Sbjct 816842 AAAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCTTCAAGAATAGCGTACCAGAGCTTCT 816783 Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGT 213735 |||||| | | | ||| | | ||| | ||| |||| || || | | | Sbjct 816782 GGGCCTTCATGGTCTTGC-GACCCTTACCGGCCTT--CTCATACTTCTCATACAAGGCCT 816726 Query 213736 TGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCC 213795 || || | ||| || | | || || || || ||| |||||||| ||| Sbjct 816725 CAAACTCCTCGCCGTAGCAATCGGCAAGGCCAGGGCACTCATTGGGGCACATGAGAGTCC 816666 Query 213796 AGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854 |||| |||| | |||| ||| | || ||||||||| || |||| ||| |||||| |||| Sbjct 816665 AGTCACCGTTCTTCTC-GACACGCTTCATGAACAGATCAGGGATCCATAGCGCGAGGAAC 816607 Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914 | || | || | ||| ||| ||| ||| ||||| || || || || || ||| Sbjct 816606 AAATCACGGGCTCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAG 816547 Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCC 213971 | || |||||||| ||||| | ||||||||| || || || || | |||| || ||| Sbjct 816546 ACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCGGGTCGCTTGTTGCCACCC 816487 Query 213972 TGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGAC 214031 |||||||| || || ||||||||| || || | ||| | || ||||| Sbjct 816486 TGGTCCACGTACCGAGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCATTGGAG 816427 Query 214032 TGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAG--GTTGCTCATGGAGAGCC 214089 || ||||| || || || || || |||| || | | | || | | |||| | Sbjct 816426 GTACCATTGGTACCGGCAATGTATGAACCGGTTGCGCGGATTCGGTGGACGTTGAGA--C 816369 Query 214090 CTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGG 214149 | |||||||| || ||||||||||||||| || | | | || || ||| || Sbjct 816368 CGATGCCACCAGCCATCTTGGAGATCATGGCACACGTCTTGAGGGTGTCGTAGATACCCT 816309 Query 214150 CCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGC 214209 | |||||||| || | | || | ||||||||| || ||||||||| | | | Sbjct 816308 CAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAAGATAGCTGGGGCTGAGGGGTAC 816249 Query 214210 CAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGG 214269 ||| |||||| || |||||| ||| ||| | | |||||| | || | ||| |||||| Sbjct 816248 CAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTAAAAAACTTCATGGACATGAGGTTGTAGG 816189 Query 214270 TCTCCAGGAC 214279 |||| ||||| Sbjct 816188 TCTCGAGGAC 816179 >seq12 Length=1358207 Score = 125 bits (138), Expect = 1e-23 Identities = 346/519 (67%), Gaps = 15/519 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| ||||| || || | ||||| |||||||| ||||| || | | || ||||| || Sbjct 114594 CTGATAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTTTC 114535 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||| ||| ||||||||| | | || |||||| | ||| ||| | | || | Sbjct 114534 CATAAAGTCGAAGGGGTTCGTAGACTTGTACACCT-TCTCATTGCCGAGGGCAACAAGAA 114476 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTA-TGAGG 48016 | |||| || ||| |||| || |||| |||||| | ||||||||| | | | | Sbjct 114475 GACGATCGGCTACGAACTCAATATATTGCTTCATGAGATCGGAGTTCATGCCGAGTAAAG 114416 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| ||| | || | |||||||| |||||||| || || || || | || Sbjct 114415 CACA-GGGAAGCGCTTCAGTGAGAAATTCCTTCTCGATAGTGACAGCATCGGTGATGATA 114357 Query 48077 TGCTTAA-CGCGGGACTCTGAGGGTTTGTTGCGC---AGGTGCTTGGCATAGAGCATGCA 48132 | || || | | | || || || | || | ||||| | | ||||| ||| Sbjct 114356 TCCTGAATCACTTG-CT-TGCTGGCACG--GCCCTTAAGGTGAGAG---TGGAGCAGGCA 114304 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 || ||||| |||||| ||| || || ||| ||| || |||| |||||| | ||| Sbjct 114303 AGCGAAGTCGGTGTGCAGGCCCTCATCACGGGAGATCAGTTCGTTTGAGAAGGTCAAACC 114244 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 |||||||| || | || ||||||||||| || | || |||| ||| ||||||||| Sbjct 114243 AGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAAGCAAAAGCACCACTGAAGAAGAT 114184 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 |||||| ||||| || || || || | | |||| | | | |||||||||||| Sbjct 114183 GCCCTCTACTGCAGCAAAGGCAACAAGGCGTTGAGCGAAGGTGGACTGCTTGTCTGAGAT 114124 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| | ||||| || |||||||| ||||||| || Sbjct 114123 CCACCGCAATGCCCACTCAGCCTTCTTTCTGATGCAAGG 114085 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||||||||| | ||||| || ||||||||| || ||||| | |||||| | Sbjct 113956 TCTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAAACAACGGGCCTCCGGGA 113897 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| ||||| | | |||| ||| | ||| ||||| ||||| || ||||||||||| | Sbjct 113896 TCTGAACTTCAGCGCTAAATCGCTCGACCAGGTTCTCGTTGACGATGCCATCTGAAGCGG 113837 Query 48549 CAAAGAAGGCAAG 48561 ||||||| ||||| Sbjct 113836 CAAAGAAAGCAAG 113824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931527047784960