Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 219 8e-52 seq12 132 9e-26 >seq4 Length=2550084 Score = 219 bits (242), Expect = 8e-52 Identities = 827/1278 (65%), Gaps = 47/1278 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 |||| |||||||| ||||| ||||||||||| ||||| || ||| | ||||| || Sbjct 817248 GTCAAAGCAGCGTGATAGATAGTCTCAAAGATTTGTTTGTTCAG-CTCACGAGCCTCAGG 817190 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 || || ||||| || || | ||| | || || || ||||| || |||| ||| Sbjct 817189 GGACTCAAAAGGCATGCGGAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCGACACC 817130 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 |||||| | ||| | | ||||| | ||| || || || || || ||| |||||| Sbjct 817129 GATGGGACGGTGGCGCATGTTGCTGTTGCGA--GCCTCAGGAACAGGGTAATGGTTGACA 817072 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGAT-GACTT--TAACCACCTCGGTCAGCTTCTGG 221650 || || | ||||| ||||| | || | || ||||| ||| || ||| ||| Sbjct 817071 TCAATGATCTTGTTCAGGTTGCGGACGACAGTCTGGGTAACC---TCGTGCAACTTTTGG 817015 Query 221651 TGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACG 221710 | | | ||| ||| || | | || || || | ||||| | Sbjct 817014 AAGTC--ATAACAAT-------CGTTGTTGTAG---TCAACGAATGAAGGCAGGGCCAGC 816967 Query 221711 CTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAG 221770 ||| ||||| || ||||| || || || | | | || | ||||| || || || Sbjct 816966 GAGGCAAGGTTGCAGACGGCAACTTCATCAGGGGCGCTGTATTCGATGATTTCAGTGCAC 816907 Query 221771 AGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCC 221830 |||||| || || || || |||| || || || |||||| |||||| ||| Sbjct 816906 AGGTTGGAGCTGCGAATAGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCATGATCC 816847 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||| ||||| ||||| |||||||| |||||| | ||||| || |||||| Sbjct 816846 TTGTAAAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCTTCAAGAATAGCGTACCAGAGC 816787 Query 221891 TCTCTGGCGCTCACCGTCCTCTTGACTGCACCCT---CGGTCTTTTCATACCCGGTATAG 221947 | ||||| || | | ||||| ||||| ||| ||| |||||| ||| Sbjct 816786 T-TCTGGGCCTT--CATGGTCTTGCG---ACCCTTACCGGCCTTCTCATACTTCTCATAC 816733 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 | ||||||| || ||||| ||| | ||||| || ||| ||| ||||| Sbjct 816732 AAGGCCTCAAACTCCTCGCCGTAGCAATCGGCAAGGCCAGGGCACTCATTGGGGCACATG 816673 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 ||| |||||| ||| | | ||| | || |||||| || || |||||||| ||||| Sbjct 816672 AGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAACAGATCAGGGATCCATAGCGCG 816613 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || | ||| | || || ||| ||| |||| ||| || | || || | ||| Sbjct 816612 AGGAACAAATCACGGGCTCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAAC 816553 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || || | || |||||||| ||||| || |||| ||| | ||| ||||||||||||||| Sbjct 816552 TCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCGGGTCGCTTGTTG 816493 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 |||||||| |||| | | | ||| | |||||||| ||||| | || | || Sbjct 816492 CCACCCTGGTCCA-CGTACCGAGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACC 816434 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGA 222306 ||||| ||| ||||| || |||||| | |||| || | || | | || || Sbjct 816433 ATTGGAGGTACCATTGGTACCGGCAATGTATGAACCGGTTGCGC---GGATTC-GGTGGA 816378 Query 222307 C----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 | | ||||| ||||| || || ||||||||||| || ||||||| ||||| Sbjct 816377 CGTTGAGACCGATGCCACCAGCCATCTTGGAGATCATGGCACACGTCTTGAGGGTGTCGT 816318 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 ||| ||||| || ||||||||| | || | || || || || || | ||| | | Sbjct 816317 AGATACCCTCAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAAGATAGCTGGGGCT 816258 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 | || || ||||| || || ||||| |||||| ||||| | | | ||||| | Sbjct 816257 GAGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTAAAAAACTTCATGGACATGA 816198 Query 222483 GATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCA 222542 | | ||| ||||| | ||| | |||||| || || || || | | | || Sbjct 816197 GGTTGTAGGTCTCGAGGACACGCTCGATGTCATCACCCCAGATACCCACAGAGACACGCA 816138 Query 222543 TGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTT 222600 || ||||| ||| || | ||| ||| || | || || || ||||||||| Sbjct 816137 TGATCATGTGCTGTGGTCGCTCGACAATCTTGCCATCGATCT--TAAGGAGGTACGATCG 816080 Query 222601 TTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGC 222660 |||||||||||||| || ||||| | | || ||||| | | | | || | ||| | Sbjct 816079 CTCCAGAGTCTTGAAGCCGAAGTACTGGTAGTTGAAGTCACGGTCATAGACGATGGCAGA 816020 Query 222661 GTCCAGCTCCGACTTGTG 222678 ||| |||||| |||||| Sbjct 816019 GTCTAGCTCCTCCTTGTG 816002 Score = 93.3 bits (102), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||| | ||| || ||| | || |||| || ||||||||| ||||||||||||| || || Sbjct 817501 GTAGATGTTGGATGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGATGTACT 817442 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCG 221250 || || ||||||||||||| |||||||||||||| Sbjct 817441 AGCAGTAGGCATGGGTGCCAGGAGCAGACTGTTGCG 817406 >seq12 Length=1358207 Score = 132 bits (146), Expect = 9e-26 Identities = 342/523 (65%), Gaps = 33/523 (6%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCT--ACGTT 25871 |||||| | |||||| |||||| || ||||||| ||| || ||| | || || Sbjct 114089 GCATCAGAAAGAAGGCTGAGTGGGCATTGCGGTGGATCT-CAGACA-AGCAGTCCACCTT 114146 Query 25872 TGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGC 25931 | | || || || ||||||||||| || ||||||||||| ||||| ||| | ||||| Sbjct 114147 CGCTCAACGCCTTGTTGCCTTTGCTGCAGTAGAGGGCATCTTCTTCAGTGGTGCTTTTGC 114206 Query 25932 GGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 ||||||||||||||||| || || |||||| || || ||| || ||||| || Sbjct 114207 TTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTTTGACCTTCTCAAACGAACT 114266 Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC---------AC 26042 ||| | | || ||||| || |||| || || || ||||||||| || | Sbjct 114267 GATCTCCCGTGATGAGGGCCTGCACACCGACTTCGCTTGCCTGCTCCACTCTCACCTTAA 114326 Query 26043 GGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAG--TATCATCAAAGAGGCT 26100 |||| | ||| | ||| |||| || | ||| |||||||| || ||| Sbjct 114327 GGGC--CGTGC-CAGCAA------GCAAGTGA-----TTCAGGATATCATCACCGATGCT 114372 Query 26101 GTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAAC 26160 || ||||||||||| |||| | ||||||||| Sbjct 114373 GTCACTATCGAGAAGGAATTTCTCACTGAAGCGCTTCCCTGTGCTTTACTCGGCATGAAC 114432 Query 26161 AACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT--GTGCCAGCTGG 26218 | ||||||| ||||| ||||||| || ||||| | ||| || |||| || | Sbjct 114433 TCCGATCTCATGAAGCAATATATTGAGTTCGTAGCCGATCGTCTTCTTGTTGCC--CTCG 114490 Query 26219 GACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGG 26278 | | | | |||| | | ||||| |||||||||||||||||||| || | | Sbjct 114491 GCAATGAGAAGGTGTACAAGTCTACGAACCCCTTCGACTTTATGGAAAACATTTCTCTCG 114550 Query 26279 AAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 || |||||||||||||| || ||| | ||||| |||||||| Sbjct 114551 GTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTATCA 114593 Score = 91.5 bits (100), Expect = 3e-13 Identities = 187/277 (68%), Gaps = 7/277 (3%) Strand=Plus/Plus Query 25460 AGGTAACACACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCG 25519 || |||| || || | || ||| | |||||||||||| | ||| |||||| | Sbjct 113681 AGCTAACCCAAAATTAGATCTGGCAAATGTACAAGAAGCACGAGGCCTCGTTCTGGACTG 113740 Query 25520 CCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGA 25574 | || || |||||||| ||||||| || | | |||| || || || | ||| Sbjct 113741 CTGAGGAAATTGATCTTTCCAAGGATTTGCATGACTGGAACAACCGCCTGAATGC--AGA 113798 Query 25575 CGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAA 25634 ||||||| ||| | || | | || |||||||| || || ||||| || || || Sbjct 113799 CGAGCAGTTCTTTGTTTCCCACATTCTTGCTTTCTTTGCCGCTTCAGATGGCATCGTCAA 113858 Query 25635 CGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTA 25694 |||||| ||| |||| |||| | | ||||| ||| | ||||||| |||||||| Sbjct 113859 CGAGAACCTGGTCGAGCGATTTAGCGCTGAAGTTCAGATCCCGGAGGCCCGTTGTTTCTA 113918 Query 25695 CGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAG 25731 || |||||||| || || || | ||||||||| Sbjct 113919 TGGCTTCCAGATCATGATGGAGAACATCCACTCTGAG 113955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839064383360