Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq320 152 6e-32 seq229 141 1e-28 seq2 102 9e-17 >seq320 Length=907 Score = 152 bits (168), Expect = 6e-32 Identities = 340/506 (67%), Gaps = 6/506 (1%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||| || || | || || || ||||| ||||||||||| || |||||||| || Sbjct 310 ACACCAATTGGGCCCATTCCGGGCCCACCACCACCATGTGGAATGCAAAATGTCTTGTGA 369 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCA-CATGGTTTTGCTAGACCTACCTGTGC 138301 | ||||||||||| ||||| |||||| | || | ||| ||| || || |||||||| Sbjct 370 AGGTTTAGATGACAAACATCAGCACCA-ATCCACCCTGGACTTGTTAATCCAACCTGTGC 428 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATAT 138361 ||| | || || ||||| | || || ||||| ||||||||||||| ||||| || || Sbjct 429 ATTCATGTTAGCTCCATCCATGTAAACTTGACCTCCATTGTCATGAATAATCTTGCAAAT 488 Query 138362 CTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 || || ||| | || |||||||| || ||||| |||| ||||| | || Sbjct 489 CTCATCAATACCCTCCTCATAGACTCCATGAGTAGAAGGATAGGTAACCATAAGAGCAGA 548 Query 138422 GAGTT--CAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCA 138479 || | ||| | | | | || ||| || |||| || | || || || Sbjct 549 TAGATACTCCTTGTTTGCCTCA--GCAGCCTTGCGTACCTCTTCAATATTGATATTACCT 606 Query 138480 TCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTA 138539 | ||| ||| | || ||||||||| ||| | ||||| |||||||| Sbjct 607 TTGGAGTCAGTTCCCACAGTAATAATTTTCATTCCACACATAGCAGCACTTGCAGGATTT 666 Query 138540 GTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATCCTTGA 138599 ||||||||||| ||| | || || | ||| ||||| | | || ||||||| | | Sbjct 667 GTTCCATGTGCAGACACAGGGATGATACACACATTACGATGATGATCTCCTCTCGCCATA 726 Query 138600 TGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGTTGT 138659 ||||| || |||| | | ||| || ||||| || || | ||| || || ||||| Sbjct 727 TGATAAGCCCGGATAACCATCAGCCCAGCATATTCTCCAGCAGCTCCAGCATTTGGTTGC 786 Query 138660 AATGATATAGAATCAAAACCTGTGAT 138685 || || | ||| ||||| || || || Sbjct 787 AAAGAGAAAGAGTCAAATCCGGTTAT 812 >seq229 Length=1513 Score = 141 bits (156), Expect = 1e-28 Identities = 202/282 (72%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 ||| ||| ||||| |||| ||| || |||||||||||||| ||||||||||||||||||| Sbjct 1340 CAGCCATGTTTGCAAGCAATGCCTGAGCTGTGCAGATGTTGCTGGTTGCTTTGTCTCTTC 1281 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC-- 139411 |||||||||| ||||| || || | || | | | || || || || || Sbjct 1280 TAATATGCTGTTCTCTTGTCTGCATGGCCATACGTAAAGCCGGCTTTCCGGAAGAATCCA 1221 Query 139412 CACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAA 139471 ||||||| ||| | ||||| || || ||| |||| ||||| | | | ||||| || Sbjct 1220 CACTGAC--ACCGATGATTCTTCCGGGCATCATTCTTTTATATTCCTGGGAAGTTGCTAA 1163 Query 139472 GAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTAC 139531 || || || || |||||||| || ||||| || | ||| || ||||| | ||| || Sbjct 1162 AAAGGCTGCGTGTGGACCTCCATAACCCATTGGGACACCGAATCTTTGAGCAGAACCCAC 1103 Query 139532 AGCAATATCAAATCCCCACTCACCTACAGGTTGCATTAACAC 139573 | ||||||| ||| ||||||| ||||| ||||||| Sbjct 1102 AACAATATCGGCTCCAAACTCACCAGGAGGTT---TTAACAC 1064 >seq2 Length=4202288 Score = 102 bits (112), Expect = 9e-17 Identities = 191/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319 || || |||| || || || | || ||||| | ||| || |||||||| || || Sbjct 1082237 AGACCCTCTGGGCCGTGGTAGACGGCGTAGAAGGCGCTCATGTTGGCGAGCAGGGCCTGG 1082178 Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379 || ||||||||||| ||||| || || |||| || ||| |||||||| | || || || Sbjct 1082177 GCAGTGCAGATGTTGCTGGTGGCCTTCTCTCGTCGAATGTGCTGCTCACGGGTCTGGAGA 1082118 Query 139380 GCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGT 139439 || | | | || | ||||| || |||| || ||| | ||||| || || Sbjct 1082117 GCAAGGCGGAGAGCTCGCTTGCCGAGGCGGTCCTTGGAAACACCGATAATTCGTCCGGGA 1082058 Query 139440 ATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCC 139499 ||||| | ||| |||||||||| || || ||||| || || ||||| || || | ||| Sbjct 1082057 ATCTTGCGCTTGTACTTGTCTGAGGTGGCGAAGAAGGCGGCGTGAGGGCCACCAAAGCCC 1081998 Query 139500 ATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 | || | ||| || | || ||| || | ||||| ||| Sbjct 1081997 AGGGGCACACCGAATCGCTGAGCACTGCCGAAAGCAACATC 1081957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578994824684880