Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq320 152 6e-32
seq229 141 1e-28
seq2 102 9e-17
>seq320
Length=907
Score = 152 bits (168), Expect = 6e-32
Identities = 340/506 (67%), Gaps = 6/506 (1%)
Strand=Plus/Plus
Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242
|||||||| || || | || || || ||||| ||||||||||| || |||||||| ||
Sbjct 310 ACACCAATTGGGCCCATTCCGGGCCCACCACCACCATGTGGAATGCAAAATGTCTTGTGA 369
Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCA-CATGGTTTTGCTAGACCTACCTGTGC 138301
| ||||||||||| ||||| |||||| | || | ||| ||| || || ||||||||
Sbjct 370 AGGTTTAGATGACAAACATCAGCACCA-ATCCACCCTGGACTTGTTAATCCAACCTGTGC 428
Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATAT 138361
||| | || || ||||| | || || ||||| ||||||||||||| ||||| || ||
Sbjct 429 ATTCATGTTAGCTCCATCCATGTAAACTTGACCTCCATTGTCATGAATAATCTTGCAAAT 488
Query 138362 CTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421
|| || ||| | || |||||||| || ||||| |||| ||||| | ||
Sbjct 489 CTCATCAATACCCTCCTCATAGACTCCATGAGTAGAAGGATAGGTAACCATAAGAGCAGA 548
Query 138422 GAGTT--CAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCA 138479
|| | ||| | | | | || ||| || |||| || | || || ||
Sbjct 549 TAGATACTCCTTGTTTGCCTCA--GCAGCCTTGCGTACCTCTTCAATATTGATATTACCT 606
Query 138480 TCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTA 138539
| ||| ||| | || ||||||||| ||| | ||||| ||||||||
Sbjct 607 TTGGAGTCAGTTCCCACAGTAATAATTTTCATTCCACACATAGCAGCACTTGCAGGATTT 666
Query 138540 GTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATCCTTGA 138599
||||||||||| ||| | || || | ||| ||||| | | || ||||||| | |
Sbjct 667 GTTCCATGTGCAGACACAGGGATGATACACACATTACGATGATGATCTCCTCTCGCCATA 726
Query 138600 TGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGTTGT 138659
||||| || |||| | | ||| || ||||| || || | ||| || || |||||
Sbjct 727 TGATAAGCCCGGATAACCATCAGCCCAGCATATTCTCCAGCAGCTCCAGCATTTGGTTGC 786
Query 138660 AATGATATAGAATCAAAACCTGTGAT 138685
|| || | ||| ||||| || || ||
Sbjct 787 AAAGAGAAAGAGTCAAATCCGGTTAT 812
>seq229
Length=1513
Score = 141 bits (156), Expect = 1e-28
Identities = 202/282 (72%), Gaps = 7/282 (2%)
Strand=Plus/Minus
Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353
||| ||| ||||| |||| ||| || |||||||||||||| |||||||||||||||||||
Sbjct 1340 CAGCCATGTTTGCAAGCAATGCCTGAGCTGTGCAGATGTTGCTGGTTGCTTTGTCTCTTC 1281
Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC-- 139411
|||||||||| ||||| || || | || | | | || || || || ||
Sbjct 1280 TAATATGCTGTTCTCTTGTCTGCATGGCCATACGTAAAGCCGGCTTTCCGGAAGAATCCA 1221
Query 139412 CACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAA 139471
||||||| ||| | ||||| || || ||| |||| ||||| | | | ||||| ||
Sbjct 1220 CACTGAC--ACCGATGATTCTTCCGGGCATCATTCTTTTATATTCCTGGGAAGTTGCTAA 1163
Query 139472 GAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTAC 139531
|| || || || |||||||| || ||||| || | ||| || ||||| | ||| ||
Sbjct 1162 AAAGGCTGCGTGTGGACCTCCATAACCCATTGGGACACCGAATCTTTGAGCAGAACCCAC 1103
Query 139532 AGCAATATCAAATCCCCACTCACCTACAGGTTGCATTAACAC 139573
| ||||||| ||| ||||||| ||||| |||||||
Sbjct 1102 AACAATATCGGCTCCAAACTCACCAGGAGGTT---TTAACAC 1064
>seq2
Length=4202288
Score = 102 bits (112), Expect = 9e-17
Identities = 191/281 (68%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319
|| || |||| || || || | || ||||| | ||| || |||||||| || ||
Sbjct 1082237 AGACCCTCTGGGCCGTGGTAGACGGCGTAGAAGGCGCTCATGTTGGCGAGCAGGGCCTGG 1082178
Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379
|| ||||||||||| ||||| || || |||| || ||| |||||||| | || || ||
Sbjct 1082177 GCAGTGCAGATGTTGCTGGTGGCCTTCTCTCGTCGAATGTGCTGCTCACGGGTCTGGAGA 1082118
Query 139380 GCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGT 139439
|| | | | || | ||||| || |||| || ||| | ||||| || ||
Sbjct 1082117 GCAAGGCGGAGAGCTCGCTTGCCGAGGCGGTCCTTGGAAACACCGATAATTCGTCCGGGA 1082058
Query 139440 ATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCC 139499
||||| | ||| |||||||||| || || ||||| || || ||||| || || | |||
Sbjct 1082057 ATCTTGCGCTTGTACTTGTCTGAGGTGGCGAAGAAGGCGGCGTGAGGGCCACCAAAGCCC 1081998
Query 139500 ATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540
| || | ||| || | || ||| || | ||||| |||
Sbjct 1081997 AGGGGCACACCGAATCGCTGAGCACTGCCGAAAGCAACATC 1081957
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578994824684880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |