Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 141 3e-28 seq12 107 6e-18 seq1 91.5 4e-13 >seq4 Length=2550084 Score = 141 bits (156), Expect = 3e-28 Identities = 572/888 (64%), Gaps = 25/888 (3%) Strand=Plus/Minus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 |||||||||| | || ||| ||||||||| || || || ||||| | ||||||| Sbjct 816932 CGCTGTATTCGATGATTTCAGTGCACAGGTTGGAGCTGCGAATAGTGCCGAGGTTCTTCT 816873 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 |||| || | ||| | ||||||||| || ||| | ||| | || ||||| ||| Sbjct 816872 GGTTGCTCTTGCGGTTGGCATGATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCAGTCT 816813 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTG----TATCTG 155801 | || || ||||| |||||| | |||| || || |||| || | | Sbjct 816812 GAGCTTCAAGAATAGCGTACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTACCGG 816753 Query 155802 CCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGT 155861 ||||| ||||| ||| ||||| | | ||||| ||||| ||||| || Sbjct 816752 CCTTC----TCATACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAATCGGCAAGG 816697 Query 155862 CCAGGGCACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCC 155918 |||||||||| || |||||| | || | ||| | || || ||| |||||| | Sbjct 816696 CCAGGGCACTCATTGGGGCACATGAGAGTCCAGTCACCGTTCTTCTCGA---CACGCTTC 816640 Query 155919 ATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC-TCCTCATC 155977 || || | |||| ||| | || ||| | || | || | ||| || || | Sbjct 816639 ATGAACAGATCAGGGATCCATAGCGCGAGGAACAAATCACGGGC-TCGGACCTCTTCCTT 816581 Query 155978 GCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATA 156037 ||||| ||||| || || || | ||| || | ||| | || ||||| || || Sbjct 816580 TCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTA 816521 Query 156038 CATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATT 156094 || || ||| ||| | |||| |||||||| || || ||||||||||| || || Sbjct 816520 GATGGCGAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCCACGTACCGAGCAGTGTTGTT 816461 Query 156095 GAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGA 156154 |||||||| ||||| || | | ||||||||| || |||||||| ||| ||| | || Sbjct 816460 GAAGACACGAAGCATGGGGGTGACACCATTGGAGGTACCATTGGTACCGGCAATGTATGA 816401 Query 156155 ACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTT 156213 ||| | || ||| | || | | || || || ||||| | |||| || || || Sbjct 816400 ACCGGTTGCGCGGATTCGGTGGACGTTGAGACCGATGCCACCAG-CCATCTTGGAGATCA 816342 Query 156214 GAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGT 156272 || || ||| | || | | | ||||| ||||| || || | ||| | | Sbjct 816341 TGGCACACGTCTTGAGGGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATGTCAACCA 816282 Query 156273 AGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCA 156332 ||| |||| ||| || || || | || || ||||||||||| || || || | || Sbjct 816281 AGA-AGCATGAAGATAGCTGGGGCTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCG 816223 Query 156333 TGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GA 156391 || ||||| |||| | ||||| | ||| ||||| | ||| | | | | Sbjct 816222 TGGGTAAAAAACTTCATGGACATGAGGTTGTAGGTCTCGAGGACACGCTCGATGTCATCA 816163 Query 156392 CCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCC 156451 ||| | |||| | |||||| | ||| ||| ||||| || ||||| |||||| || Sbjct 816162 CCCCAG-ATACCCACAGAGACACGCATGATCATGTGCTGTGGTCGCTCGACAATCTTGCC 816104 Query 156452 ATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 ||| || || ||||| | || |||||||| || || ||||| || Sbjct 816103 ATCGATCTTAAGGAGGTACGATCGCTCCAGAGTCTTGAAGCCGAAGTA 816056 >seq12 Length=1358207 Score = 107 bits (118), Expect = 6e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || | |||||| |||| ||||| | |||||| ||||||| | | Sbjct 114083 TTCCTTGCATCAGAAAGAAGGCTGAGTGGGCATTGCGGTGGATCTCAGACAAGCAGTCCA 114142 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 || ||| || || ||||| ||||||| |||||||||||| || ||||||||||| | Sbjct 114143 CCTTCGCTCAACGCCTTGTTGCCTTTGCTGCAGTAGAGGGCATCTTCTTCAGTGGTGC-T 114201 Query 133557 TCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615 | ||| || || || ||||| || ||||| || | | ||||| || || || ||| Sbjct 114202 TTTGCTTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTTTGACCTTCTCAAAC 114261 Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 ||||| || || | || |||| || |||||||| || || Sbjct 114262 GAACTGATCTCCCGTGATGAGGGCCTGCACACCGACTTCGC 114302 >seq1 Length=5148149 Score = 91.5 bits (100), Expect = 4e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541 || ||||||| | ||||| |||||||| ||||||||||||| ||| ||||||||||| Sbjct 1957254 GAGGCACCGTACGCAATCAAGCAATCACGTTCCATTTCACCGAGACGCAGACCACCATCT 1957195 Query 251542 CGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTA 251601 || | | ||| |||| || || || || | | | |||||| ||| || | Sbjct 1957194 CGGGAACGACCTTCGGTGGGTTGTCGGGTCAAGATGGCTCGAGGACCACGGGATCGAGAA 1957135 Query 251602 TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 || || || | ||||| ||||| || ||||||||| | ||||||| |||||||| Sbjct 1957134 TGCATTTTGTCTTGGACCATGTGCTTCAGGCGCTGGTAGTAGATGGGACCGTTGAAGATG 1957075 Score = 87.8 bits (96), Expect = 5e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||||| ||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct 1957251 GCACCGTACGCAATCAAGCAATCACGTTCCATTTCACCGAGACGCAGACCACCATCTCGG 1957192 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392 || | ||| | | | ||| || || || | | || ||||| | | ||| ||| Sbjct 1957191 GAACGACCTTCGGTGGGTTGTCGGGTCAAGATGGCTCGAGGACCACGGGATCGAGAATGC 1957132 Query 233393 ATTTTATCTTTAACCATATGCTTCAG 233418 ||||| |||| ||||| |||||||| Sbjct 1957131 ATTTTGTCTTGGACCATGTGCTTCAG 1957106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471808284314478