Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq3 140 4e-27
seq4 132 6e-25
seq26 129 7e-24
seq12 86.0 8e-11
>seq3
Length=2993360
Score = 140 bits (154), Expect = 4e-27
Identities = 94/105 (90%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
||||||||||||| || |||||||| |||||| |||| |||||| | |||||||||||||
Sbjct 1231327 CCAACTACCTCGATATTAAGCCTCTTCTCGATGTTGGCTGCAAGACCGTGGCCAACATGA 1231268
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||| ||||||||||| |||||||| || |||||||
Sbjct 1231267 TCAAGGGCAAGTCCCCCGAGGAGATTCGCAAGACATTCAACATCA 1231223
>seq4
Length=2550084
Score = 132 bits (146), Expect = 6e-25
Identities = 217/313 (69%), Gaps = 0/313 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| ||||| || || |||| ||| ||||| || |||||||| || || |||||
Sbjct 816487 CTGGTCCACGTACCGAGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCATTGGA 816428
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|| ||||| || || | ||| | |||| ||||| | ||| || | ||
Sbjct 816427 GGTACCATTGGTACCGGCAATGTATGAACCGGTTGCGCGGATTCGGTGGACGTTGAGACC 816368
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|||||| || ||| ||||||||| | || ||| ||||| ||||||||||| |||||
Sbjct 816367 GATGCCACCAGCCATCTTGGAGATCATGGCACACGTCTTGAGGGTGTCGTAGATACCCTC 816308
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| |||||||||| || | ||||| || || || || || | || ||
Sbjct 816307 AATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAAGATAGCTGGGGCTGAGGGGTACC 816248
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||||| ||||| | || ||| || |||| | |||||| || ||||||
Sbjct 816247 AGCGTTGAAGAGGGTGGGGGAGGCGTGGGTAAAAAACTTCATGGACATGAGGTTGTAGGT 816188
Query 1630365 GGCGAGCACGCGC 1630377
|||| || |||
Sbjct 816187 CTCGAGGACACGC 816175
>seq26
Length=769710
Score = 129 bits (142), Expect = 7e-24
Identities = 268/397 (68%), Gaps = 8/397 (2%)
Strand=Plus/Plus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | |||| ||||||||||||| | ||||| | | |
Sbjct 525865 GGCGAGTCCCACGGCAAGTCCGTCTCCTGCATCATCGACAACTGCCCGCCCAACCTCGCT 525924
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGC-GCACT 18218
|| | ||||| || |||||||| || | | || ||||| || ||||| | ||| |
Sbjct 525925 TTGACTGAGGCTGATATCCAGCCGCAACTCAACCGCCGCCGTCCCGGCCAATCCAGCA-T 525983
Query 18219 TTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCT 18278
| || || ||||| ||| ||||| |||| ||||| ||||||||||| || || |
Sbjct 525984 CACAACCCCTCGCAATGAGAAGGATCGAGTCACGATCCACTCGGGCACGGAAAAGGGTGT 526043
Query 18279 CACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTA 18338
||| || || | ||| || ||| || ||||| ||||| || ||| |||||
Sbjct 526044 CACTCTTGGTACTCCCATCCTCCTGACGGTTCCCAACGAAGACCAACGCCCCAAGGACTA 526103
Query 18339 TTCCGACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTACATGGC 18392
| |||| | || | || || ||||| |||||||||| ||||| |||
Sbjct 526104 TGGTGACAAGACCATTGACCTCTACCCACGCCCCTCGCACGCCGACTGGACCTATCTGGA 526163
Query 18393 CAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCAT 18452
|||||||| ||||||| |||||||| || || || || ||||||||| |
Sbjct 526164 GAAGTACGGAGTCAAGGCTTCGTCGGGTGGTGGTCGTAGCAGCGCTCGCGAGACCATTGC 526223
Query 18453 GCGCGTCGCCGCCGGCGCGGTCGCCGAGAAATGGCTC 18489
|| || || || ||||| ||||| ||||| ||||||
Sbjct 526224 TCGAGTTGCTGCTGGCGCTGTCGCTGAGAAGTGGCTC 526260
Score = 100 bits (110), Expect = 3e-15
Identities = 111/147 (76%), Gaps = 1/147 (1%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| || ||||| || || ||||| |||||||| || | ||||| ||||||
Sbjct 526480 GACAGCACTGGTGGCACCGTCACCTGCGTTATTCGCAACGCCCCCGTTGGCCTTGGCGAG 526539
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||| |||||| | |||||| || | |||||||||||| || ||||| ||| |
Sbjct 526540 CCTGCCTTCGACAAGCTTGAGGCCCTTCTTGGCCACGCCATGCTCTCTATCCCCGCCGTC 526599
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTTT 19193
|||| ||||||||||| | |||| ||
Sbjct 526600 AAGGCCTTCGAGATTGG-ATCGGGCTT 526625
>seq12
Length=1358207
Score = 86.0 bits (94), Expect = 8e-11
Identities = 132/184 (72%), Gaps = 11/184 (6%)
Strand=Plus/Minus
Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253
||||| |||||| |||| | || |||||||||||||||||||||||||| |||||
Sbjct 114270 GATCAGTTCGTTTGAGAAGGTCAAACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAT 114211
Query 869254 GG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCT 869312
|| ||| ||| || ||| ||||||||||| || || |||||| | | || || |
Sbjct 114210 GGAAGCA-AAAGCACCACTGAAGAAGATGCCCTCTACTGCAGCAAAGGCAACAAGGCGTT 114152
Query 869313 CGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTT 869369
|| |||||| || || ||||| ||||||| || ||||| || ||||| |
Sbjct 114151 GAGCGAAGGTG--GA----CTGCTTGTCTGAGATCCACCGCAATGCCCACTCAGCCTTCT 114098
Query 869370 TCCT 869373
| ||
Sbjct 114097 TTCT 114094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107098660046598
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |