Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 140 4e-27 seq4 132 6e-25 seq26 129 7e-24 seq12 86.0 8e-11 >seq3 Length=2993360 Score = 140 bits (154), Expect = 4e-27 Identities = 94/105 (90%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||||||||| || |||||||| |||||| |||| |||||| | ||||||||||||| Sbjct 1231327 CCAACTACCTCGATATTAAGCCTCTTCTCGATGTTGGCTGCAAGACCGTGGCCAACATGA 1231268 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| ||||||||||| |||||||| || ||||||| Sbjct 1231267 TCAAGGGCAAGTCCCCCGAGGAGATTCGCAAGACATTCAACATCA 1231223 >seq4 Length=2550084 Score = 132 bits (146), Expect = 6e-25 Identities = 217/313 (69%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||| || || |||| ||| ||||| || |||||||| || || ||||| Sbjct 816487 CTGGTCCACGTACCGAGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCATTGGA 816428 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || ||||| || || | ||| | |||| ||||| | ||| || | || Sbjct 816427 GGTACCATTGGTACCGGCAATGTATGAACCGGTTGCGCGGATTCGGTGGACGTTGAGACC 816368 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| || ||| ||||||||| | || ||| ||||| ||||||||||| ||||| Sbjct 816367 GATGCCACCAGCCATCTTGGAGATCATGGCACACGTCTTGAGGGTGTCGTAGATACCCTC 816308 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| || | ||||| || || || || || | || || Sbjct 816307 AATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAAGATAGCTGGGGCTGAGGGGTACC 816248 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| ||||| | || ||| || |||| | |||||| || |||||| Sbjct 816247 AGCGTTGAAGAGGGTGGGGGAGGCGTGGGTAAAAAACTTCATGGACATGAGGTTGTAGGT 816188 Query 1630365 GGCGAGCACGCGC 1630377 |||| || ||| Sbjct 816187 CTCGAGGACACGC 816175 >seq26 Length=769710 Score = 129 bits (142), Expect = 7e-24 Identities = 268/397 (68%), Gaps = 8/397 (2%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | |||| ||||||||||||| | ||||| | | | Sbjct 525865 GGCGAGTCCCACGGCAAGTCCGTCTCCTGCATCATCGACAACTGCCCGCCCAACCTCGCT 525924 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGC-GCACT 18218 || | ||||| || |||||||| || | | || ||||| || ||||| | ||| | Sbjct 525925 TTGACTGAGGCTGATATCCAGCCGCAACTCAACCGCCGCCGTCCCGGCCAATCCAGCA-T 525983 Query 18219 TTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCT 18278 | || || ||||| ||| ||||| |||| ||||| ||||||||||| || || | Sbjct 525984 CACAACCCCTCGCAATGAGAAGGATCGAGTCACGATCCACTCGGGCACGGAAAAGGGTGT 526043 Query 18279 CACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTA 18338 ||| || || | ||| || ||| || ||||| ||||| || ||| ||||| Sbjct 526044 CACTCTTGGTACTCCCATCCTCCTGACGGTTCCCAACGAAGACCAACGCCCCAAGGACTA 526103 Query 18339 TTCCGACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTACATGGC 18392 | |||| | || | || || ||||| |||||||||| ||||| ||| Sbjct 526104 TGGTGACAAGACCATTGACCTCTACCCACGCCCCTCGCACGCCGACTGGACCTATCTGGA 526163 Query 18393 CAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCAT 18452 |||||||| ||||||| |||||||| || || || || ||||||||| | Sbjct 526164 GAAGTACGGAGTCAAGGCTTCGTCGGGTGGTGGTCGTAGCAGCGCTCGCGAGACCATTGC 526223 Query 18453 GCGCGTCGCCGCCGGCGCGGTCGCCGAGAAATGGCTC 18489 || || || || ||||| ||||| ||||| |||||| Sbjct 526224 TCGAGTTGCTGCTGGCGCTGTCGCTGAGAAGTGGCTC 526260 Score = 100 bits (110), Expect = 3e-15 Identities = 111/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| || ||||| || || ||||| |||||||| || | ||||| |||||| Sbjct 526480 GACAGCACTGGTGGCACCGTCACCTGCGTTATTCGCAACGCCCCCGTTGGCCTTGGCGAG 526539 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||| |||||| | |||||| || | |||||||||||| || ||||| ||| | Sbjct 526540 CCTGCCTTCGACAAGCTTGAGGCCCTTCTTGGCCACGCCATGCTCTCTATCCCCGCCGTC 526599 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTTT 19193 |||| ||||||||||| | |||| || Sbjct 526600 AAGGCCTTCGAGATTGG-ATCGGGCTT 526625 >seq12 Length=1358207 Score = 86.0 bits (94), Expect = 8e-11 Identities = 132/184 (72%), Gaps = 11/184 (6%) Strand=Plus/Minus Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253 ||||| |||||| |||| | || |||||||||||||||||||||||||| ||||| Sbjct 114270 GATCAGTTCGTTTGAGAAGGTCAAACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAT 114211 Query 869254 GG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCT 869312 || ||| ||| || ||| ||||||||||| || || |||||| | | || || | Sbjct 114210 GGAAGCA-AAAGCACCACTGAAGAAGATGCCCTCTACTGCAGCAAAGGCAACAAGGCGTT 114152 Query 869313 CGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTT 869369 || |||||| || || ||||| ||||||| || ||||| || ||||| | Sbjct 114151 GAGCGAAGGTG--GA----CTGCTTGTCTGAGATCCACCGCAATGCCCACTCAGCCTTCT 114098 Query 869370 TCCT 869373 | || Sbjct 114097 TTCT 114094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107098660046598