Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 127 3e-23 seq12 98.7 2e-14 seq4 91.5 2e-12 >seq3 Length=2993360 Score = 127 bits (140), Expect = 3e-23 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||| || ||||| || |||||| | || |||||||||||||||||| | | Sbjct 1231327 CCAACTACCTCGATATTAAGCCTCTTCTCGATGTTGGCTGCAAGACCGTGGCCAACATGA 1231268 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| |||||||| || |||||||| || ||||||| Sbjct 1231267 TCAAGGGCAAGTCCCCCGAGGAGATTCGCAAGACATTCAACATCA 1231223 >seq12 Length=1358207 Score = 98.7 bits (108), Expect = 2e-14 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 793907 ATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 793966 ||| || || || ||| |||||| |||||||||||||| |||| || || ||||| Sbjct 114591 ATAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTTTCCAT 114532 Query 793967 CCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCG 794026 | ||| ||||| | | | ||| |||||| ||||| | |||| || || Sbjct 114531 AAAGTCGAAGGGGTTCGTAGACTTGTACACCTTCTCATTGCCGAGGGCAACAAGAAGACG 114472 Query 794027 GTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCAC 794086 ||||| ||||| ||||| || || |||||| ||| ||||||||||| | || Sbjct 114471 ATCGGCTACGAACTCAATATATTGCTTCATGAGATCGGAGTTCATGCCGAGTAAAGCACA 114412 Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||| |||| || ||| ||| || |||||||| ||| || ||| ||||||| Sbjct 114411 GGGAAGCGCTTCAGTGAGAAATTCCTTCTCGATAGTGACAGCATCGGTGATGAT 114358 Score = 91.5 bits (100), Expect = 2e-12 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 794584 GGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATG 794643 || ||||||| ||| ||||||||||| || ||||||||||| ||||||||||| || || Sbjct 113993 GGCTCCTTGATGTATGTGTCGATGAGCAGAGAGTAGGTCTCAGAGTGGATGTTCTCCATC 113934 Query 794644 GCGATCTGGAAGCCATAAAAGCA 794666 ||||||||||||||| || || Sbjct 113933 ATGATCTGGAAGCCATAGAAACA 113911 >seq4 Length=2550084 Score = 91.5 bits (100), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||| ||||| |||||||| ||| |||| ||||| ||| | | Sbjct 46997 GTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCATGCTTGGCAAGTTCACCGGGAAG 46938 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 ||| || || |||| ||||||||||| || Sbjct 46937 GATGAGACGAACGGAAGTCTGGATCTCACG 46908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916193850966866