Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq461 138 2e-27
seq2 102 2e-16
>seq461
Length=561
Score = 138 bits (152), Expect = 2e-27
Identities = 170/230 (74%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || || || || || ||||| ||||| || || || || |
Sbjct 358 TACCACCACGGAGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGG 299
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| |||| ||||||||||| |||||||| || ||||| | ||| ||||| ||||| |
Sbjct 298 CGAGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGG 239
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760
| ||||||||||| || || ||||| || || || || || || || || || | ||
Sbjct 238 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTC-GGAGCTCTCC 180
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| ||||| || || || || || ||||| || || ||||| ||||||||
Sbjct 179 ACCTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 130
Score = 129 bits (142), Expect = 1e-24
Identities = 153/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666
||| || || || || ||||| || || ||||| | | | | | |||||||| |||||
Sbjct 561 GTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTG 502
Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726
|||||| || ||||| | || || || ||||| || || || ||||| || || |||||
Sbjct 501 TTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTT 442
Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTG 82785
|| || || || ||||| || || || | || || |||||||| |||||||| ||||
Sbjct 441 CGCCTTCACGTTGTCAATGGTGTC-GGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTG 383
Query 82786 TCAACGTCTTTACAAATATCTGCAT 82810
|||| ||||| || || ||||||||
Sbjct 382 TCAATGTCTTCACGAAAATCTGCAT 358
>seq2
Length=4202288
Score = 102 bits (112), Expect = 2e-16
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | ||| || || ||||| ||||| || || || || || | | ||
Sbjct 1893230 ACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCC 1893289
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||| || || || || ||||||||||| || | || || || || || || || |||||
Sbjct 1893290 GTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTT 1893349
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|| |||||||| | || ||||| || || |||||| | || || |||| ||| ||
Sbjct 1893350 GTCCTGAATCTTAGACTTCACATTGTCGATGGTATCAGATGACTCCACCTCCAGAGTAAT 1893409
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || || ||||| || || || |||||
Sbjct 1893410 GGTCTTTCCAGTTAAGGTCTTGACGAAGATTTGCAT 1893445
Score = 86.0 bits (94), Expect = 1e-11
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| ||||| | ||| || || || || ||||| || || || || |
Sbjct 1893729 TACCACCACGGAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 1893788
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || ||| ||||| || || || || ||||||||||| || | || || || || |
Sbjct 1893789 AGAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGG 1893848
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| || |||||||| | || || || || || || || | || |
Sbjct 1893849 GAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGA 1893908
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786
| || | ||| || |||||||| ||
Sbjct 1893909 CCTCAAGAGTGATGGTCTTGCCCGT 1893933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981820985647466
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |