Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq461 138 2e-27 seq2 102 2e-16 >seq461 Length=561 Score = 138 bits (152), Expect = 2e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || || || ||||| ||||| || || || || | Sbjct 358 TACCACCACGGAGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGG 299 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || |||| ||||||||||| |||||||| || ||||| | ||| ||||| ||||| | Sbjct 298 CGAGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGG 239 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | ||||||||||| || || ||||| || || || || || || || || || | || Sbjct 238 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTC-GGAGCTCTCC 180 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || || || || || ||||| || || ||||| |||||||| Sbjct 179 ACCTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 130 Score = 129 bits (142), Expect = 1e-24 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| || || || || ||||| || || ||||| | | | | | |||||||| ||||| Sbjct 561 GTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTG 502 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 |||||| || ||||| | || || || ||||| || || || ||||| || || ||||| Sbjct 501 TTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTT 442 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTG 82785 || || || || ||||| || || || | || || |||||||| |||||||| |||| Sbjct 441 CGCCTTCACGTTGTCAATGGTGTC-GGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTG 383 Query 82786 TCAACGTCTTTACAAATATCTGCAT 82810 |||| ||||| || || |||||||| Sbjct 382 TCAATGTCTTCACGAAAATCTGCAT 358 >seq2 Length=4202288 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || ||||| ||||| || || || || || | | || Sbjct 1893230 ACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCC 1893289 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 1893290 GTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTT 1893349 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| | || ||||| || || |||||| | || || |||| ||| || Sbjct 1893350 GTCCTGAATCTTAGACTTCACATTGTCGATGGTATCAGATGACTCCACCTCCAGAGTAAT 1893409 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| || || || ||||| Sbjct 1893410 GGTCTTTCCAGTTAAGGTCTTGACGAAGATTTGCAT 1893445 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| | ||| || || || || ||||| || || || || | Sbjct 1893729 TACCACCACGGAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 1893788 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| ||||| || || || || ||||||||||| || | || || || || | Sbjct 1893789 AGAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGG 1893848 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || |||||||| | || || || || || || || | || | Sbjct 1893849 GAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGA 1893908 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 | || | ||| || |||||||| || Sbjct 1893909 CCTCAAGAGTGATGGTCTTGCCCGT 1893933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981820985647466