Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq461 118 3e-21 seq2 95.1 3e-14 >seq461 Length=561 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || |||||||| ||||| ||||| ||||| || || ||| Sbjct 133 CAGATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCTTGGAGGTGGAGAGCTCCGAC 192 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||||||| || ||| || Sbjct 193 ACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAACAG 252 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||||||||| ||| | ||||| || || || | ||||| |||||| || Sbjct 253 AGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCAGAACCCTCGCCGACTACAACATC 312 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| || || || || || Sbjct 313 CAGAAGGAATCAACCCTCCA 332 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||| || ||||| |||||||| ||||| || || ||||| | || || ||| Sbjct 382 ACAGGGAAGACGATTACTTTGGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCG 441 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || || || || ||| || || | |||||||||||||| Sbjct 442 AAGATCCAGGACAAGGAGGGGATCCCACCAGACCAGCAGAGGTTGATCTTCGCCGGAAAA 501 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||| || |||||||||| ||||||||| ||||||| ||||| || |||||| Sbjct 502 CAACTTGAAGACGGCCGGACTTTGGCGGATTACAACATCCAGAAGGAGTCGACGCTTCAC 561 >seq2 Length=4202288 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || |||||| | || || || || ||||| |||| Sbjct 1893659 CAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGACACCATCGACAA 1893600 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || || || ||| |||||| || | || || || Sbjct 1893599 TGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTT 1893540 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||| | || || || | ||| || |||| |||||| | ||||| || || Sbjct 1893539 CGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAATC 1893480 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || || |||||||| || ||||||| Sbjct 1893479 CACCCTCCACCTTGTCCTGCGACTTCG 1893453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181813319812974