Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq461 118 3e-21
seq2 95.1 3e-14
>seq461
Length=561
Score = 118 bits (130), Expect = 3e-21
Identities = 146/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| | || |||||||| ||||| ||||| ||||| || || |||
Sbjct 133 CAGATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCTTGGAGGTGGAGAGCTCCGAC 192
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || ||||||||| || ||| ||
Sbjct 193 ACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAACAG 252
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||| | |||||||||||||| ||| | ||||| || || || | ||||| |||||| ||
Sbjct 253 AGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCAGAACCCTCGCCGACTACAACATC 312
Query 206353 CAGAAAGAGTCTACTCTTCA 206372
||||| || || || || ||
Sbjct 313 CAGAAGGAATCAACCCTCCA 332
Score = 109 bits (120), Expect = 1e-18
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
||||| || ||||| |||||||| ||||| || || ||||| | || || |||
Sbjct 382 ACAGGGAAGACGATTACTTTGGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCG 441
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || || || || || ||| || || | ||||||||||||||
Sbjct 442 AAGATCCAGGACAAGGAGGGGATCCCACCAGACCAGCAGAGGTTGATCTTCGCCGGAAAA 501
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| | ||||| || |||||||||| ||||||||| ||||||| ||||| || ||||||
Sbjct 502 CAACTTGAAGACGGCCGGACTTTGGCGGATTACAACATCCAGAAGGAGTCGACGCTTCAC 561
>seq2
Length=4202288
Score = 95.1 bits (104), Expect = 3e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
||| || ||||| || || || |||||| | || || || || ||||| ||||
Sbjct 1893659 CAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGACACCATCGACAA 1893600
Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||| ||||| || || || || || ||| |||||| || | || || ||
Sbjct 1893599 TGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTT 1893540
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||||||||||||| | || || || | ||| || |||| |||||| | ||||| || ||
Sbjct 1893539 CGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAATC 1893480
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || |||||||| || |||||||
Sbjct 1893479 CACCCTCCACCTTGTCCTGCGACTTCG 1893453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181813319812974
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |