Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 116 5e-20 seq12 111 2e-18 >seq4 Length=2550084 Score = 116 bits (128), Expect = 5e-20 Identities = 330/505 (65%), Gaps = 23/505 (5%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| || ||| |||||||| | | | ||| ||||| |||| |||||| Sbjct 816002 CACAAGGAGGAGCTAGACTCTGCCATCGTCTATGACCGTGACTTCAACTACCAGTACTTC 816061 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG----CGATATTGTCGTCGA 259797 || | ||| || || || ||||| | ||| || | | ||||||| | Sbjct 816062 GGCTTCAAGACTCTGGAGCGATCGTACCTC-CTTAAGATCGATGGCAAGATTGTCG---A 816117 Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857 ||| || ||| | ||| ||||||||||| | | || | |||| | | || Sbjct 816118 GCGACCACAGCACATGATCATGCGTGTCTCTGTGGGTA--TCTGGGGT-------GATGA 816168 Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTC 259917 || | |||| || |||| |||||| | |||||| | |||| || ||| Sbjct 816169 CA------TCGAGCGTGTCCTCGAGACCTACAACCTCATGTCCATGAAGTTTTTTACCCA 816222 Query 259918 AGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCT 259977 || | ||||| ||||| || || || || || | || ||| || || ||||| | Sbjct 816223 CGCCTCCCCCACCCTCTTCAACGCTGGTACCCCTCAGCCCCAGCTATCTTCATGCTTCTT 816282 Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037 | | |||||||||| || || ||||| ||||| ||||| |||||| ||| || | Sbjct 816283 GGTTGACATGAAGGAGGACAGCATTGAGGGTATCTACGACACCCTCAAGACGTGTGCCAT 816342 Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGC 260097 ||||||||| ||| || ||||||||| | || ||| | ||||| | || | Sbjct 816343 GATCTCCAAGATGGCTGGTGGCATCGGTCTCAACGTCCACCGAATCCGCGCAACCGGTTC 816402 Query 260098 CTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAA 260157 ||| | || || ||||| || ||||| || | ||||||||||| || || || Sbjct 816403 ATACATTGCCGGTACCAATGGTACCTCCAATGGTGTCACCCCCATGCTTCGTGTCTTCAA 816462 Query 260158 CGACACGGCGCGCTACGTCGACCAG 260182 | |||| || || ||||| |||||| Sbjct 816463 CAACACTGCTCGGTACGTGGACCAG 816487 >seq12 Length=1358207 Score = 111 bits (122), Expect = 2e-18 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 1455905 CTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAG 1455964 |||| || ||||| ||||||||||| ||||||||||| || || |||| | Sbjct 113828 CTTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTGGTCGAGCGATTTAGCGCTG 113887 Query 1455965 AGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCC 1456024 | || || | || ||||| |||| || || || ||||||||| || || ||||||| Sbjct 113888 AAGTTCAGATCCCGGAGGCCCGTTGTTTCTATGGCTTCCAGATCATGATGGAGAACATCC 113947 Query 1456025 ACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 ||||||| |||||||| || || |||||||| ||| ||||||| || Sbjct 113948 ACTCTGAGACCTACTCTCTGCTCATCGACACATACATCAAGGAGCC 113993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177763552792028