Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq5 131 2e-25
seq461 122 8e-23
seq2 104 2e-17
seq8 93.3 4e-14
>seq5
Length=2272025
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||||| || | || |||||||| || |||||||| ||| |
Sbjct 1174652 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1174711
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| || ||||||||||| ||||| || | ||||||||||||| ||
Sbjct 1174712 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 1174771
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||| | | | | | |||||| || ||||||
Sbjct 1174772 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 1174831
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | |||||||| || ||||| | || || || || ||||||||
Sbjct 1174832 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1174878
>seq461
Length=561
Score = 122 bits (134), Expect = 8e-23
Identities = 168/231 (73%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||||| | || ||||| || |||||||| |||||
Sbjct 356 CCACCACGGAGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCG 297
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||||| |||| || ||||| || || || || ||||| | ||| ||||| | |||
Sbjct 296 AGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGA 237
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCG---CTCGATTC 35685
| | ||||||||| |||||| ||||| |||| | | |||||| ||| ||
Sbjct 236 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCAC-GTTGTCGATGGTGTCGGAGCTC---TC 181
Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||||||| ||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct 180 CACCTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 130
Score = 118 bits (130), Expect = 1e-21
Identities = 146/196 (74%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||||||||| ||||| || || |||| || || || || || || ||
Sbjct 549 CTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGTTTTCCGGCGAA 490
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||||| ||||||||| | || | | |||||||||| |||||| ||||| ||
Sbjct 489 GATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 431
Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720
|| | | ||||| |||| |||||||||| || ||||| || || ||||| || |
Sbjct 430 TGTCAATGGTGTCGGAGCTC---TCCACCTCCAAAGTAATCGTCTTCCCTGTCAATGTCT 374
Query 35721 TCACAAATATCTGCAT 35736
|||| || ||||||||
Sbjct 373 TCACGAAAATCTGCAT 358
>seq2
Length=4202288
Score = 104 bits (114), Expect = 2e-17
Identities = 123/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| ||||||||||| |||| || || || |||| || |||||||| || || ||
Sbjct 1893483 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAA 1893542
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| ||||||||||||| |||| || |||||||||| |||||| ||||| | |
Sbjct 1893543 ATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTG 1893602
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
| | |||||| || || ||||| | ||||| || || || ||
Sbjct 1893603 TCGATGGTGTCGGAGGACTCAACCTCAAGAGTGATGGTCTTGCCAGT 1893649
Score = 104 bits (114), Expect = 2e-17
Identities = 126/169 (75%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| | |||||| |||| || ||||||||||| |||||
Sbjct 1893766 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAA 1893825
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||||| |||| || |||||||||| ||||| ||| | ||
Sbjct 1893826 GATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 1893884
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
|| | | |||||| || || ||||| | ||||| || || |||||
Sbjct 1893885 TGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGT 1893933
Score = 102 bits (112), Expect = 7e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| ||||||||||| ||| || ||| || |||| || ||||||||||| |||||
Sbjct 1893255 TCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAG 1893314
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|| | ||||||||||||| || | | |||||||||| ||||| ||||| | |
Sbjct 1893315 ATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTAGACTTCACATTG 1893374
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | || || || |||||||||| || || || || || || || || || ||
Sbjct 1893375 TCGATGGTATCAGATGACTCCACCTCCAGAGTAATGGTCTTTCCAGTTAAGGTCTTGACG 1893434
Query 35726 AATATCTGCAT 35736
|| || |||||
Sbjct 1893435 AAGATTTGCAT 1893445
>seq8
Length=1962940
Score = 93.3 bits (102), Expect = 4e-14
Identities = 134/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 35539 CGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACC 35598
|| || | |||| || |||||||| |||| | ||| || | || || |||||||| ||
Sbjct 146551 CGCACCCACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCC 146492
Query 35599 CGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT 35658
|| || |||| ||||||||||||| |||| || |||||||||| |||||| |||
Sbjct 146491 GGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT 146432
Query 35659 CAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718
| | | | | ||||| || || ||||| | ||||| || || ||||| | ||
Sbjct 146431 GACATTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGT 146372
Query 35719 TTTCACAAA 35727
||||| ||
Sbjct 146371 CTTCACGAA 146363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450790816349520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |