Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 seq5 105 7e-18 seq461 96.9 4e-15 >seq2 Length=4202288 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || ||||||||||| |||||||||||||||| Sbjct 1893219 CCGCCACGGAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTC 1893278 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| || || ||||| || | ||||||||| || || || Sbjct 1893279 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGG 1893338 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || || || ||| | || || || || ||||| Sbjct 1893339 ATACCCTCCTTGTCCTGAATCTTAGACTTCACATTGTCGATGGTATCAGATGACTCCACC 1893398 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||||||||| || || ||||| || || ||||| |||||||| Sbjct 1893399 TCCAGAGTAATGGTCTTTCCAGTTAAGGTCTTGACGAAGATTTGCAT 1893445 Score = 123 bits (136), Expect = 3e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||||| || ||||| || ||||||||||| ||||||||||||||| | ||| | Sbjct 1893456 AGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGG 1893515 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| || || || ||||||| ||||||||| || || || ||||| || Sbjct 1893516 CCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCC 1893575 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || ||| | |||||||| || || || || ||||| Sbjct 1893576 TTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCAAGAGTG 1893635 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGA 134703 ||||| || || || | || || |||| Sbjct 1893636 ATGGTCTTGCCAGTGAGGGTCTTGACGA 1893663 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || ||||| ||||| || |||||||||||| Sbjct 1893731 CCACCACGGAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1893790 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| || || ||||| || | ||||||||| || || || Sbjct 1893791 AGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGA 1893850 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | |||||||| || || || Sbjct 1893851 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACC 1893910 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || ||||| ||||| || || || Sbjct 1893911 TCAAGAGTGATGGTCTTGCCCGT 1893933 >seq5 Length=2272025 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||| ||||| || ||||||||||||| | |||| | ||| |||||||| Sbjct 1174675 GTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCGAGCTG 1174734 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||| || | |||||||| || || || ||||| || || || || || || Sbjct 1174735 CTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 1174794 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | |||||||| || ||||| || || || || || || || || Sbjct 1174795 GGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGT 1174854 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || || ||||| || ||||| ||| Sbjct 1174855 GAGGGTCTTGACGAAGATCTGCATCTTG 1174882 >seq461 Length=561 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || |||||||| || |||||||||||| | | ||| ||| || |||||| Sbjct 332 TGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCTAGCTGT 273 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || ||||| | ||| || || || || || ||||| || || || || || Sbjct 272 TTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTG 213 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || ||| | |||||||| ||||| || | || |||||||| ||||| Sbjct 212 GCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTTTTTCCGGTC 153 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || ||||| Sbjct 152 AAGGTTTTCACAAAGATCTGCAT 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505395279164880