Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 196 6e-45 seq12 84.2 3e-11 seq8 84.2 3e-11 >seq4 Length=2550084 Score = 196 bits (216), Expect = 6e-45 Identities = 1108/1749 (63%), Gaps = 53/1749 (3%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| |||||||| ||||||||||| || | ||||| || | ||||| | Sbjct 817845 CGGAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCTGGTA 817786 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAA- 110481 | |||| ||| || || || |||| || ||| | ||| |||||||||||| Sbjct 817785 ATCTTGCCCATGGTGGGGTCTTTCATGTGGATGTTGAGGGACTGAGATTGGTCAATGAAG 817726 Query 110482 GCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCG 110541 ||||| | || | || ||||| | | ||| | | ||| ||||| || || Sbjct 817725 GCGCCTCGGTCG-GCAGCCATCTGGACGACCTGGCGCTGGGAAATCTCCCACACGGTCTT 817667 Query 110542 ATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTT 110601 |||||| ||| | ||| | ||||| | | ||| ||||||||||| ||| ||| Sbjct 817666 GTAGAGAGCCTTAACATCCGCGGGGATGTTGGGGATGTTCTGGATGGA----GCCGTCTT 817611 Query 110602 CA-CCATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGA 110657 || | |||| | |||||| | | ||||| || || || | ||| || |||| Sbjct 817610 CAGCAATGATTCTGTTTTTCATAGCATCCGACCATAGGCCCATGTCAACGAGATCCTTGA 817551 Query 110658 CGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTG 110717 ||| |||||||| ||||| || || ||| | | ||||||||| | Sbjct 817550 GGAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGACGAGAGTAGATGTTGG 817491 Query 110718 TTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 110777 |||||| || || ||||| || || ||||||| ||| || | || || || |||| Sbjct 817490 ATGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGATGTACTAGCAGTAGGCA 817431 Query 110778 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACAT 110837 | ||||||| | |||||||| || | ||| | |||||||| | || ||| | Sbjct 817430 TGGGTGCCAGGAGCAGACTGTTGCGGATACCGTGCTCCTTGACCTGCTCTCGGAGCGGCT 817371 Query 110838 CCCAGTCGTAGTTGAGCT----TGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893 ||||||| | ||||| |||||||| || ||||||||| |||||||| | ||| Sbjct 817370 CCCAGTCCCA---GAGCTCGGAAGGTTTCACGTT-CCACATGTCGAACTGAAGGATACCT 817315 Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA-ATTCACA 110952 | || || ||||| |||| ||||| |||| ||| | | | || | | ||| Sbjct 817314 TCAGAGGCAGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCAAGCTGCAC- 817256 Query 110953 GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGC 111012 | ||| || | |||||||| || || |||||||| | |||| ||| || Sbjct 817255 GGACGCAGTCAAAGCAGCGTGATAGATAGTCTCAAAGATTTGTTTGTTCAGCTCACGAGC 817196 Query 111013 TTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACC 111072 ||| || ||||| | |||| || || |||| || ||||| || ||||| Sbjct 817195 CTCAGGGGACTCAAAAGGCATGCGGAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACC 817136 Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAA 111129 | ||| || || | ||| ||||| || || | ||| || ||| ||| || ||| Sbjct 817135 GACACCGATGGGACGGTGGCGCATGTT--GCTGTTGCG-AGCCTCAGGAACAGGGTAATG 817079 Query 111130 ATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTT 111188 || ||||||| ||| || || | ||| ||| || | || || || || Sbjct 817078 GTTGACATCAATGATCTTGTTCAGGTTGCGGACGACAGTCTGGGTAACCTCGTGCAACTT 817019 Query 111189 TT-----TCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGA 111243 || |||||| ||| || | | | | || | || ||||| | || Sbjct 817018 TTGGAAGTCATAA-CAATCGT-----TGTTGTAGTCAACGAATGAAGGCAGGGCCAGCGA 816965 Query 111244 TGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAA 111303 || | ||||| || || ||||| | |||| || | ||||| || || | Sbjct 816964 GGCAAGGTTGCAGACGGCAACTTCATCAGGGGCGCTGTATTCGATGATTTCAGTGCACAG 816905 Query 111304 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT-GCACGCATCCT 111362 |||||| || ||| || || | ||||| ||||| ||||| ||| ||| | ||||| Sbjct 816904 GTTGGAGCTGCGAATAGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCATG-ATCCT 816846 Query 111363 TGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACA 111421 |||| |||||| |||| | || ||||| ||||| | || |||||||| | ||| | | Sbjct 816845 TGTAAAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCTTCAAGAATAGCGTACCAGAGCT 816786 Query 111422 TCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGG 111478 || | | || |||| ||| | || | || || ||| ||||| || | | Sbjct 816785 TCTGGGCCT----TCATGGTCTTGCGACCCTTACCGGCCTTCTCATACTTCTCATACAAG 816730 Query 111479 GCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGA 111538 || ||||||||||| || |||| || || || || | || || | ||| Sbjct 816729 GCCTCAAACTCCTCGCCGTAGCAATCGGCAAGGCCAGGGCACTCATTGGGGCACATGAGA 816670 Query 111539 GACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 111598 | ||| | ||| | ||| || ||||||||||| || || || ||||| || | Sbjct 816669 GTCCAGTCACCGTTCTTCTCGACACGCTTCATGAACAGATCAGGGATCCATAGCGCGAGG 816610 Query 111599 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 || | ||| | || ||||||| | || ||||| || | || |||||||| Sbjct 816609 AACAAATCACGGGCTCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAACTCG 816550 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCA 111715 | || ||| |||||||| |||||||| |||| |||| || || ||| ||| Sbjct 816549 AAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCGGGTCGCTTGTTGCCA 816490 Query 111716 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 111775 | || | || || || || ||| ||| || || |||||||| || | | ||||| Sbjct 816489 CCCTGGTCCACGTACCGAGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCATTG 816430 Query 111776 GATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATC 111835 || |||||| || || ||| || | || | | |||| || | Sbjct 816429 GAGGTACCATTGGTACCGGCAATGTATGAACCGGTTGCGCGGATTCGGTGGACGTTGAGA 816370 Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || |||||| ||| ||||| |||||| | | || || | |||||||| Sbjct 816369 CCGATGCCACCAGCCATCTTGGAGATCATGGCACACGTCTTGAGGGTGTCGTAGATACCC 816310 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | || ||||||||| || | | | |||||| || | ||| || || ||| Sbjct 816309 TCAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAAGATAGCTGGGGCTGAGGGGTA 816250 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTA 112014 ||||| ||||||||||| || | ||||| | || | || | |||||| || ||| Sbjct 816249 CCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGT-AAAAAACTTCATGGACATGAGGTTGTA 816191 Query 112015 TGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACAT 112074 ||||| | |||| || ||||| || || ||| || | | ||| ||||||| ||| Sbjct 816190 GGTCTCGAGGACACGCTCGATGTCATCACCCCAGATACCCACAGAGACACGCATGATCAT 816131 Query 112075 GTACTGTGG 112083 || |||||| Sbjct 816130 GTGCTGTGG 816122 >seq12 Length=1358207 Score = 84.2 bits (92), Expect = 3e-11 Identities = 299/459 (65%), Gaps = 20/459 (4%) Strand=Plus/Minus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 |||||| ||||| |||||||| |||||||||||||| ||| | || |||||||||||| Sbjct 114591 ATAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTTTCCAT 114532 Query 122430 AAAGTCAAATGGATTCTTCGCGTT-----CCAAATGGGTGGC-ACCCCAACTTGTTTGAG 122483 |||||| || || ||| | | || || | || | | |||| || Sbjct 114531 AAAGTCGAAGGGGTTCGTAGACTTGTACACCTTCTCATTGCCGAGGGCAAC------AAG 114478 Query 122484 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 122543 |||||||| | || ||||||| || | ||| || |||||||| |||| | Sbjct 114477 AAGACGATCGGCTACGAACTCAATATATTGCTTCATGAGATCGGAGTTCATGCCGAGTAA 114418 Query 122544 GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 122603 ||| || || || || || || | ||||| || || || || | | ||| Sbjct 114417 AGCACAGGGAAGCGCTTCAGTGAGAAATTCCTTCTCGATAGTGACAGCATCGGTGATGAT 114358 Query 122604 GGCGTGGAT-AGTT--TCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGC 122660 | || || | || | | | | | | ||| | || | || || || || Sbjct 114357 ATCCTGAATCACTTGCTTGCTGGCACGGCCCTTAAGGTGAGAGTGGAGCAG--GCA-AGC 114301 Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720 || || ||| || |||||||| ||||| || ||||| ||||||||| | ||| || Sbjct 114300 GAAGTCGGTGTGCAGGCCCTCATCACGGGAGATCAGTTCGTTTGAGAAGGTCAAACCAGG 114241 Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATAC 122779 |||||| || |||||||| | ||| | || | ||| || | || ||||||||| | Sbjct 114240 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAAGCA-AAAGCACCACTGAAGAAGATGC 114182 Query 122780 CCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 |||| || ||||| |||| |||||||| ||||||| Sbjct 114181 CCTCTACTGCAGCAAAGGCAACAAGGCGTTGAGCGAAGG 114143 >seq8 Length=1962940 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 164607 GGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGGGT 164666 || ||| |||| || || ||||| || |||| ||| | || | |||||| ||| Sbjct 1033643 GGCCGTATTGCCCCTCGCTCCGGCCTTGCTGCCAAGAACTTCATCGACACTGGTGCTGGT 1033702 Query 164667 GTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACAAA 164726 || ||||| ||||||| || || ||||| || |||||||||| |||| || Sbjct 1033703 GTCATTGACGCCGACTACCGCGGAGAGGTCAAGGTGCTTCTCTTCAACCACGCCGATGCC 1033762 Query 164727 GACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| |||| || ||| | || || || ||||| || ||| Sbjct 1033763 GACTTTGAGGTCAAGGAAGGCGACCGCGTTGCCCAGCTCGTCCTCGAACGC 1033813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028121902400