Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 205 1e-47 seq12 105 8e-18 >seq4 Length=2550084 Score = 205 bits (226), Expect = 1e-47 Identities = 1135/1787 (64%), Gaps = 67/1787 (4%) Strand=Plus/Minus Query 117807 AACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCC 117866 || ||||||||| || ||||| | |||||||||||||| || |||||||| || Sbjct 817875 AATTGAATGGGTGCAGCAGCGGCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGACCA 817816 Query 117867 TGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAG 117926 |||||||| | | ||||| || | |||| | ||| || || |||| | Sbjct 817815 AGCTTCCAGCCGGTGAAGTGCATGCTGGTAATCTTGCCCATGGTGGGGTCTTTCATGTGG 817756 Query 117927 AGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACA 117986 | ||| | || ||||| || |||||| || || || || ||||| | | || Sbjct 817755 ATGTTGAGGGACTGAGATTGGTCAATGAAGGCGCCTCGGTCGGCAGCCATCTGGACGAC- 817697 Query 117987 TCCTTCATCTTG---ATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043 || || | || |||||||| ||| ||||||| ||||| ||| | ||||| Sbjct 817696 --CTGGCGCTGGGAAATCTCCCACACGGTCTTGTAGAGAGCCTTAACATCCGCGGGGATG 817639 Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTGACCA-TGAGA---TCCTTCATATCCTT 118099 | ||| || |||||||| || | ||| | || ||| | |||||| | | Sbjct 817638 TTGGGGATGTTCTGGATGGAGCC----GTCTTCAGCAATGATTCTGTTTTTCATAGCATC 817583 Query 118100 TGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTC 118159 ||||| || || || | |||||||| | ||| |||||||| ||||| Sbjct 817582 CGACCATAGGCCCATGTCAACGAGATCCTTGAGGAGCCAGGGGTTGACAACCTGGAACTC 817523 Query 118160 ACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGT 118218 || || ||| || | ||| ||||| |||| ||||| ||||| |||||||| |||| Sbjct 817522 GCCGGCAAGGACACGACG-AGAGTAGATGTTGGATGTGTAAGGCTCGAAGCACTCGTTGT 817464 Query 118219 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 118278 |||||| ||| || | ||| || || ||||||||||||| ||| || ||||| |||| Sbjct 817463 TACCCAGGATCTGAGATGTACTAGCAGTAGGCATGGGTGCCAGGAGCAGACTGTTGCGGA 817404 Query 118279 GACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCT---TTGTCT 118335 ||| | ||| | | | || ||| | |||||||| | ||||| | | Sbjct 817403 TACCGTGCTCCTTGACCTGCTCTCGGAGCGGCTCCCAGTCCCA---GAGCTCGGAAGGTT 817347 Query 118336 CCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCT 118395 | | | |||||| || ||||| |||||||||| || || || || |||| || || Sbjct 817346 TCACGTTCCACATGTCGAACTGAAGGATACCTTCAGAGGCAGGAGAGCCCTTGAAGGTGG 817287 Query 118396 CATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACA 118452 || || ||||| ||| || | | |||| ||| | || |||||||| | Sbjct 817286 AGTAGGGACCCTCCTCCTTGGCAAGCTGCACGGA---CGCAGTCAAAGCAGCGTGATAGA 817230 Query 118453 TTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGC 118512 | || ||||| || | |||| | ||||| ||| ||||| | | ||| Sbjct 817229 TAGTCTCAAAGATTTGTTTGTTCAGCTCACGAGCCTCAGGGGACTCAAAAGGCATGCGGA 817170 Query 118513 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 118572 || || |||| || ||||| |||||||||| || || || || || | ||| | Sbjct 817169 GGGCAAGGAAGGCATCAGCAAGACCCTGGACACCGACACCGATGGGACGGTGGCGCATGT 817110 Query 118573 TAGACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 118629 | || ||||| ||| || || ||| || ||| || | | | || || | Sbjct 817109 TGCTGTTGCGAGC---CTCAGGAACAGGGTAATGGTTGACATCAATGATCTTGTTCAGGT 817053 Query 118630 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 118689 | | |||| || || | || || | ||||| | | ||| ||| | | | Sbjct 817052 TGCGGACGACAGTCTGGGTAACCTCGTGCAACTTTTGGAAGTCATAACAATCGTTGTTGT 816993 Query 118690 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 118749 | || | ||| ||||| | || || || || || || | ||||| Sbjct 816992 AGTCAACGAATGAAGGCAGGGCCAGCGAGGCAAGGTTGCAGACGGCAACTTCATCAGGGG 816933 Query 118750 CAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 | |||| || || ||||| ||||||| ||| || || ||| ||||| | |||||| | Sbjct 816932 CGCTGTATTCGATGATTTCAGTGCACAGGTTGGAGCTGCGAATAGTGCCGAGGTTCTTCT 816873 Query 118810 GATTTGACTTTGTGTT-ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 | || ||| ||| || | |||||||||||||||| | || | || ||||| || Sbjct 816872 GGTTGCTCTTGCGGTTGGCATG-ATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCAGTC 816814 Query 118869 TGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCC 118927 || | | |||||||| | ||||| | || | || || ||| ||| || || Sbjct 816813 TGAGCTTCAAGAATAGCGTACCAGAGCTTCTG-GGCCTTCA---TGGTCTTG---CGACC 816761 Query 118928 CT------CTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGA 118981 || | | ||| ||||| || | ||| |||||||| || || | || | Sbjct 816760 CTTACCGGCCTTCTCATACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAATCGGC 816701 Query 118982 GAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 119041 || || || || || ||||| | ||||| ||| | ||| || ||| || ||||| Sbjct 816700 AAGGCCAGGGCACTCATTGGGGCACATGAGAGTCCAGTCACCGTTCTTCTCGACACGCTT 816641 Query 119042 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 119101 |||||| || || |||||||| ||||| ||| | ||| || || | ||||| | Sbjct 816640 CATGAACAGATCAGGGATCCATAGCGCGAGGAACAAATCACGGGCTCGGACCTCTTCCTT 816581 Query 119102 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 119161 || || || || | || | || || | || ||| |||||||| || || ||||| Sbjct 816580 TCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTA 816521 Query 119162 CACCGCGATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGC 119215 | |||| | || | ||| | | ||| |||||| || |||| |||||| Sbjct 816520 GATGGCGAAAGCACCGGGTCGCTT--GTTG-CCACCCTGGTCCACGTACCGAGCAGTGTT 816464 Query 119216 GTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TA 119273 ||| || ||||||||||| || ||| ||||| ||| ||||| || || || || Sbjct 816463 GTTGAAGACACGAAGCATGGGGGTGACACCATTGGAGGTACCATTGGTACCGGCAATGTA 816404 Query 119274 CGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 119333 || || || || | || ||||| || | ||| || || || ||| ||| ||| Sbjct 816403 TGA-ACCGGTT-GCGCGGATTCGGTGGACGTTGAGACCGATGCCACCAGCCATCTTGGAG 816346 Query 119334 ATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 119393 || || ||| | |||| || ||||||| || || || ||| |||| | | Sbjct 816345 ATCATGGCACACGTCTTGAGGGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATGTCA 816286 Query 119394 ATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTC 119453 | | |||||| || | || ||| || ||||||||||||||||| || || | Sbjct 816285 ACCAAGAAGCATGAAGATAGCTGGGGCTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAG 816226 Query 119454 GCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGAC-GGCGGGAATGT 119511 |||||| | || | || | |||||| || ||||||||| | ||| || | |||| Sbjct 816225 GCGTGGGT-AAAAAACTTCATGGACATGAGGTTGTAGGTCTCGAGGACACGCTCG-ATGT 816168 Query 119512 CTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 119558 | || || ||||| | ||||| ||||| | ||||| || ||| Sbjct 816167 CATCACCCCAGATACCCACAGAGACACGCATGATCATGTGCTGTGGT 816121 >seq12 Length=1358207 Score = 105 bits (116), Expect = 8e-18 Identities = 166/231 (72%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || ||||| ||||||||||| ||||| || |||||| || ||| |||||||| || Sbjct 114291 GTGCAGGCCCTCATCACGGGAGATCAGTTCGTTTGAGAAGGTCAAACCAGGCATGAGGCC 114232 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | | ||| | ||| ||||||||| ||||| || Sbjct 114231 GCGCTTCTTGAGCCAGAAGATGGAAGCAAAAGCACCACTGAAGAAGATGCCCTCTACTGC 114172 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGTATCA-AACCACTTCAT 130203 || || |||| || || | ||| |||| ||||| |||| | | | |||| || Sbjct 114171 AGCAAAGGCAACAAGGCGTTGAGCGAAGG---TGGACTGCTTGTCTGAGATCCACCGCAA 114115 Query 130204 CGCCCACTGCGCCTT-TTTCTCGATACACGGGAC--GGTCTGGATCGCTTC 130251 ||||||| ||||| ||||| ||| || || || | |||| | ||||| Sbjct 114114 TGCCCACTCAGCCTTCTTTCT-GATGCAAGGAACTGGACCTGGTTAGCTTC 114065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431381162640