Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq485 158 4e-33
seq1 158 4e-33
seq2 122 3e-22
seq461 105 2e-17
>seq485
Length=513
Score = 158 bits (174), Expect = 4e-33
Identities = 254/365 (70%), Gaps = 0/365 (0%)
Strand=Plus/Minus
Query 183426 TTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCT 183485
||||||||||| |||||| |||||| || | ||| || | |||||| ||||| ||
Sbjct 463 TTTTCAACAGGCTCCATACATTTTCTGAAGAGATCCATGTTCAGCTCTTCAAATCTGGCA 404
Query 183486 CTAGTTAAAGATGaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTT 183545
| |||| | || | || || | ||| | ||| || || || ||||| || | |||
Sbjct 403 CGGGTTATGGTGGAGTAGAAATCGACACCTTCATACAAAGAGTCTATTTCGATTGTGGTT 344
Query 183546 TGTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAAT 183605
|| | | || ||||| || |||||||||| || || | ||||||| | | |
Sbjct 343 TGAGCGGTGGACGATAAAGTCCTTTTAGCTCTCTCGCAAGAGGTTCTTAACCTTCTCAGA 284
Query 183606 GATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGT 183665
| |||||| || | || || |||| ||||| |||||||| || || || |||||
Sbjct 283 GCTCTTGGGTTTCCGGTGATGTCTTTCTTATGCTTTCTTTTGAACTCTTGAACGAAATGG 224
Query 183666 TGAAGTAATCTTGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTA 183725
| | | ||| | ||||||||||| ||||| | ||| || || || || || | |||
Sbjct 223 TTGACCATTCTGTTGTCAAAATCTTCTCCACCGAGATGAGTGTCACCGGCGGTTGATTTC 164
Query 183726 ACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAA 183785
|||||||| || || ||||| || | |||| || ||||| || ||||||||||| |
Sbjct 163 ACTTCAAAGATACCTTCTTCGATCGTCAAAAGAGACACATCGAAAGTACCACCACCGAGG 104
Query 183786 TCAAA 183790
|||||
Sbjct 103 TCAAA 99
Score = 154 bits (170), Expect = 4e-32
Identities = 323/479 (67%), Gaps = 8/479 (2%)
Strand=Plus/Plus
Query 349700 ATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA------AATGAGT 349753
|| || || || || || || || |||||||| || || | || || || |||
Sbjct 15 ATCATCAACGAGCCAACCGCCGCTGCAATTGCTTACGGTTTAGACAAGAAAGCAACGAGC 74
Query 349754 GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTA 349813
| | ||| || || ||||||| ||||| | |||||||||||||| ||||| || ||
Sbjct 75 GTCGGAGAGAAGAACGTTCTTATCTTTGACCTCGGTGGTGGTACTTTCGATGTGTCTCTT 134
Query 349814 CTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGT 349873
| || | ||||| || || |||||||| ||| |||| || ||||| || ||||| |||
Sbjct 135 TTGACGATCGAAGAAGGTATCTTTGAAGTGAAATCAACCGCCGGTGACACTCATCTCGGT 194
Query 349874 GGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC- 349932
|||||||||||||| || | | || ||||| ||| |||| || || | ||||
Sbjct 195 GGAGAAGATTTTGACAACAGAATGGTCAACCATTTCGTTCAAGAGTTCAAAAG-AAAGCA 253
Query 349933 TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACG 349992
||| | || || | || || ||||| || | | ||||||| | || || |
Sbjct 254 TAAGAAAGACATCACCGGAAACCCAAGAGCTCTGAGAAGGTTAAGAACCTCTTGCGAGAG 313
Query 349993 TGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGA 350052
||||| | | ||||| || || | |||||| | || ||||| || ||| | |||
Sbjct 314 AGCTAAAAGGACTTTATCGTCCACCGCTCAAACCACAATCGAAATAGACTCTTTGTATGA 373
Query 350053 TGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCT 350112
|| ||||||| || | || || ||||| | |||||||| | ||||||||
Sbjct 374 AGGTGTCGATTTCTACTCCACCATAACCCGTGCCAGATTTGAAGAGCTGAACATGGATCT 433
Query 350113 TTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAA 350171
|| ||| | ||||| ||||| ||||| || | ||| ||||| ||| |||||
Sbjct 434 CTTCAGAAAATGTATGGAGCCTGTTGAAAAGTGTTTGAGAGACGCAAAGATGGACAAAA 492
>seq1
Length=5148149
Score = 158 bits (174), Expect = 4e-33
Identities = 442/672 (66%), Gaps = 6/672 (1%)
Strand=Plus/Plus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || ||||| || || || |||||| |||| || || || | ||| | || |||||
Sbjct 1979382 GATATCATTGCCAACGACCAGGGTAACCGAACCACTCCCTCTTTCGTCGGTTTCACCGAC 1979441
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| | || |||||| | || || || || | || || || | || ||
Sbjct 1979442 ACCGAGCGTCTTATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 1979501
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441
|| || || || |||||| | |||||| | | || || ||||| || | |||
Sbjct 1979502 GTCTTCGACGCCAAGCGATTGATTGGTCGCAAGTTCTCCGACAACGAGGTGCAGGCCGAT 1979561
Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501
| || || || || || | | | || | ||| | || || || | || |||||
Sbjct 1979562 ATGAAGCACTTCCCCTTCAA-GATCATCGACAAGGC--TGGCAAGCCTGTCATCGAGGTC 1979618
Query 349502 GAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560
|| | || || || || || | | || || || ||||| || || ||||| |
Sbjct 1979619 GAGTTCAAGGGCGAGACCAAGA-ACTTCACTCCTGAGGAAATCTCCTCCATGGTCCTGAC 1979677
Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620
|| ||| || | |||||| || || | ||||| || || | | || || | ||
Sbjct 1979678 CAAGATGCGTGAGACTGCTGAGGCCTACCTTGGTGAGACCGTCAACAACGCCGTCGTCAC 1979737
Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680
|| || ||||| || || || ||||||| || || || |||||||| ||||||
Sbjct 1979738 CGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGATGCTGGTCTCATTGC 1979797
Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740
|| | || || || |||| || || || || ||||| || || || || || || ||
Sbjct 1979798 TGGCCTGAACGTCCTGCGAATCATCAACGAGCCTACTGCCGCTGCCATCGCCTACGGTCT 1979857
Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800
||| || | | || || || | || || || ||| | ||||||||||||||
Sbjct 1979858 TGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGTACTTT 1979917
Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860
||||| || || || || | || ||||| || || || || || | |||||||||||
Sbjct 1979918 CGATGTTTCTCTCCTCACCATCGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCTGGTGA 1979977
Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATT 349920
|| || | ||||| || ||||| || || || |||||| || || ||||| || ||
Sbjct 1979978 CACCCACTTGGGTGGTGAGGATTTCGACAACCGCCTCGTTAACCACTTCGTTAACGAGTT 1980037
Query 349921 TAAGCGTCAAGC 349932
||||| |||||
Sbjct 1980038 CAAGCG-CAAGC 1980048
Score = 122 bits (134), Expect = 3e-22
Identities = 219/320 (68%), Gaps = 0/320 (0%)
Strand=Plus/Plus
Query 378127 CCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTCATATCA 378186
||||| ||||| || ||| || ||||| | | | ||| | ||||| |||
Sbjct 2248875 CCATCTTCTCCGTAGAGGAACTGCACAATATCGCCCAAAGAGTTGCGCACAGTTCCATCG 2248934
Query 378187 TATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGA 378246
|||| | | | || ||||||| |||||| | | ||| || ||| |||||||||| |
Sbjct 2248935 TATCGAGCGCTCAAGTCTTCTAGTGCTTTGACCAATCGACGTTGAATGTAACCAGTTTCA 2248994
Query 378247 CTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAAT 378306
||| || ||||||||||| || ||||| |||||||| |||| || |||||||| ||
Sbjct 2248995 GCAGTCTTGACTGCAGTATCGATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAAC 2249054
Query 378307 TCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAA 378366
|| | ||||| || |||| | | | || |||||| || || | || | || ||
Sbjct 2249055 TCTGATGGAGTGAGACCACGGAGATAAGAGTTCTCAACGAAGCCACGAGCCTCAGGAGAG 2249114
Query 378367 TCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTT 378426
| ||| | || || | || || | |||||| | || || ||| | ||||| || ||
Sbjct 2249115 TAATCGTCCTTAGTGAAGTGTGGGAGTGTACGGTACTTGAATCCAAAAGGAATACGCTTG 2249174
Query 378427 CCATCAACATTCTGTTGACC 378446
|| || ||| |||| |||||
Sbjct 2249175 CCTTCCACAATCTGCTGACC 2249194
Score = 87.8 bits (96), Expect = 5e-12
Identities = 109/149 (73%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505
||||||| || || ||||| || | ||||| ||| || || | ||||||||||||
Sbjct 2248176 ATTTCTTTAAGACGAGGCACGCCGAGAGTAACGTTC---TTGGAAGACACACCAGCAAAG 2248232
Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565
||||| || || | || | || || | ||||| ||||| ||||| || || | ||
Sbjct 2248233 TGGAACGTGTTCAATGTCATCTGGGTGGCAGGCTCTCCAATGGACTGTGCAGCCAATACA 2248292
Query 377566 CCAACCATTTCTCCAGGATTGACAATAGC 377594
|||||||| || ||||||||||| | |||
Sbjct 2248293 CCAACCATCTCACCAGGATTGACGAAAGC 2248321
>seq2
Length=4202288
Score = 122 bits (134), Expect = 3e-22
Identities = 168/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||||| ||| ||||| | | || ||||| || || || || || || ||||| || |
Sbjct 1893211 TTTACTGACCGCCACGGAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGT 1893270
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || | || || || || || || || || ||||||||||| ||||| ||||| |
Sbjct 1893271 AGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGT 1893330
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || |||||||| |||| || ||||| || || | ||||||||
Sbjct 1893331 CCGGGGGGATACCCTCCTTGTCCTGAATCTTAGACTTCACATTGTCGATGGTATCAGATG 1893390
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || |||| |||||||| |||| || || || || || |||||
Sbjct 1893391 ACTCCACCTCCAGAGTAATGGTCTTTCCAGTTAAGGTCTTGACGAAGATTTGCAT 1893445
Score = 113 bits (124), Expect = 1e-19
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| || || || || ||||| || || || || || ||
Sbjct 1893727 CATACCACCACGGAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1893786
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| || || ||||| || || ||||||||||| ||||| ||||| || ||
Sbjct 1893787 GGAGAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGG 1893846
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || |||||||| || | || || || || || | || || | ||
Sbjct 1893847 GGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTC 1893906
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| ||||| || | ||||| || ||
Sbjct 1893907 GACCTCAAGAGTGATGGTCTTGCCCGT 1893933
Score = 109 bits (120), Expect = 2e-18
Identities = 158/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | || || ||||| || || || || || || ||||| || |
Sbjct 1893439 TTTGCATACCACCACGAAGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGT 1893498
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || || || || ||||| || || || ||||| ||||| |
Sbjct 1893499 AGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGT 1893558
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || ||||| || || || ||||| || || | || ||||| || || | || || |
Sbjct 1893559 CCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAGG 1893618
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||||| ||||| || | ||||| || || || || || ||
Sbjct 1893619 ACTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 1893661
>seq461
Length=561
Score = 105 bits (116), Expect = 2e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594
||||| || ||||| || || || || ||||| | || || || || ||||||||||||
Sbjct 560 TGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGT 501
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
||||| || ||||| | | ||||| || || || || || || || ||||| || ||
Sbjct 500 TTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTC 441
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
|| || || || ||||| | || || || || || | |||| ||||| || ||
Sbjct 440 GCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTGTC 381
Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737
| ||| || || |||||||||||
Sbjct 380 AATGTCTTCACGAAAATCTGCAT 358
Score = 96.9 bits (106), Expect = 1e-14
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||| || || || || || || || || || ||
Sbjct 360 CATACCACCACGGAGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTC 301
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| | |||| || ||||| || |||||||| || ||||| | | || || || ||
Sbjct 300 GGCGAGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGG 241
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||||||||| || ||||| || || || || || || || || | || || ||
Sbjct 240 GGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTC 181
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || | || | || |||||||| | ||||| ||||| ||||||||
Sbjct 180 CACCTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515244809386682
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