Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq485 158 4e-33 seq1 158 4e-33 seq2 122 3e-22 seq461 105 2e-17 >seq485 Length=513 Score = 158 bits (174), Expect = 4e-33 Identities = 254/365 (70%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 183426 TTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCT 183485 ||||||||||| |||||| |||||| || | ||| || | |||||| ||||| || Sbjct 463 TTTTCAACAGGCTCCATACATTTTCTGAAGAGATCCATGTTCAGCTCTTCAAATCTGGCA 404 Query 183486 CTAGTTAAAGATGaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTT 183545 | |||| | || | || || | ||| | ||| || || || ||||| || | ||| Sbjct 403 CGGGTTATGGTGGAGTAGAAATCGACACCTTCATACAAAGAGTCTATTTCGATTGTGGTT 344 Query 183546 TGTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAAT 183605 || | | || ||||| || |||||||||| || || | ||||||| | | | Sbjct 343 TGAGCGGTGGACGATAAAGTCCTTTTAGCTCTCTCGCAAGAGGTTCTTAACCTTCTCAGA 284 Query 183606 GATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGT 183665 | |||||| || | || || |||| ||||| |||||||| || || || ||||| Sbjct 283 GCTCTTGGGTTTCCGGTGATGTCTTTCTTATGCTTTCTTTTGAACTCTTGAACGAAATGG 224 Query 183666 TGAAGTAATCTTGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTA 183725 | | | ||| | ||||||||||| ||||| | ||| || || || || || | ||| Sbjct 223 TTGACCATTCTGTTGTCAAAATCTTCTCCACCGAGATGAGTGTCACCGGCGGTTGATTTC 164 Query 183726 ACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAA 183785 |||||||| || || ||||| || | |||| || ||||| || ||||||||||| | Sbjct 163 ACTTCAAAGATACCTTCTTCGATCGTCAAAAGAGACACATCGAAAGTACCACCACCGAGG 104 Query 183786 TCAAA 183790 ||||| Sbjct 103 TCAAA 99 Score = 154 bits (170), Expect = 4e-32 Identities = 323/479 (67%), Gaps = 8/479 (2%) Strand=Plus/Plus Query 349700 ATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA------AATGAGT 349753 || || || || || || || || |||||||| || || | || || || ||| Sbjct 15 ATCATCAACGAGCCAACCGCCGCTGCAATTGCTTACGGTTTAGACAAGAAAGCAACGAGC 74 Query 349754 GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTA 349813 | | ||| || || ||||||| ||||| | |||||||||||||| ||||| || || Sbjct 75 GTCGGAGAGAAGAACGTTCTTATCTTTGACCTCGGTGGTGGTACTTTCGATGTGTCTCTT 134 Query 349814 CTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGT 349873 | || | ||||| || || |||||||| ||| |||| || ||||| || ||||| ||| Sbjct 135 TTGACGATCGAAGAAGGTATCTTTGAAGTGAAATCAACCGCCGGTGACACTCATCTCGGT 194 Query 349874 GGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC- 349932 |||||||||||||| || | | || ||||| ||| |||| || || | |||| Sbjct 195 GGAGAAGATTTTGACAACAGAATGGTCAACCATTTCGTTCAAGAGTTCAAAAG-AAAGCA 253 Query 349933 TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACG 349992 ||| | || || | || || ||||| || | | ||||||| | || || | Sbjct 254 TAAGAAAGACATCACCGGAAACCCAAGAGCTCTGAGAAGGTTAAGAACCTCTTGCGAGAG 313 Query 349993 TGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGA 350052 ||||| | | ||||| || || | |||||| | || ||||| || ||| | ||| Sbjct 314 AGCTAAAAGGACTTTATCGTCCACCGCTCAAACCACAATCGAAATAGACTCTTTGTATGA 373 Query 350053 TGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCT 350112 || ||||||| || | || || ||||| | |||||||| | |||||||| Sbjct 374 AGGTGTCGATTTCTACTCCACCATAACCCGTGCCAGATTTGAAGAGCTGAACATGGATCT 433 Query 350113 TTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAA 350171 || ||| | ||||| ||||| ||||| || | ||| ||||| ||| ||||| Sbjct 434 CTTCAGAAAATGTATGGAGCCTGTTGAAAAGTGTTTGAGAGACGCAAAGATGGACAAAA 492 >seq1 Length=5148149 Score = 158 bits (174), Expect = 4e-33 Identities = 442/672 (66%), Gaps = 6/672 (1%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || ||||| || || || |||||| |||| || || || | ||| | || ||||| Sbjct 1979382 GATATCATTGCCAACGACCAGGGTAACCGAACCACTCCCTCTTTCGTCGGTTTCACCGAC 1979441 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| | || |||||| | || || || || | || || || | || || Sbjct 1979442 ACCGAGCGTCTTATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 1979501 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 || || || || |||||| | |||||| | | || || ||||| || | ||| Sbjct 1979502 GTCTTCGACGCCAAGCGATTGATTGGTCGCAAGTTCTCCGACAACGAGGTGCAGGCCGAT 1979561 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || || || || | | | || | ||| | || || || | || ||||| Sbjct 1979562 ATGAAGCACTTCCCCTTCAA-GATCATCGACAAGGC--TGGCAAGCCTGTCATCGAGGTC 1979618 Query 349502 GAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560 || | || || || || || | | || || || ||||| || || ||||| | Sbjct 1979619 GAGTTCAAGGGCGAGACCAAGA-ACTTCACTCCTGAGGAAATCTCCTCCATGGTCCTGAC 1979677 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||| || | |||||| || || | ||||| || || | | || || | || Sbjct 1979678 CAAGATGCGTGAGACTGCTGAGGCCTACCTTGGTGAGACCGTCAACAACGCCGTCGTCAC 1979737 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || ||||| || || || ||||||| || || || |||||||| |||||| Sbjct 1979738 CGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGATGCTGGTCTCATTGC 1979797 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | || || || |||| || || || || ||||| || || || || || || || Sbjct 1979798 TGGCCTGAACGTCCTGCGAATCATCAACGAGCCTACTGCCGCTGCCATCGCCTACGGTCT 1979857 Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 ||| || | | || || || | || || || ||| | |||||||||||||| Sbjct 1979858 TGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGTACTTT 1979917 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 ||||| || || || || | || ||||| || || || || || | ||||||||||| Sbjct 1979918 CGATGTTTCTCTCCTCACCATCGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCTGGTGA 1979977 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATT 349920 || || | ||||| || ||||| || || || |||||| || || ||||| || || Sbjct 1979978 CACCCACTTGGGTGGTGAGGATTTCGACAACCGCCTCGTTAACCACTTCGTTAACGAGTT 1980037 Query 349921 TAAGCGTCAAGC 349932 ||||| ||||| Sbjct 1980038 CAAGCG-CAAGC 1980048 Score = 122 bits (134), Expect = 3e-22 Identities = 219/320 (68%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 378127 CCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTCATATCA 378186 ||||| ||||| || ||| || ||||| | | | ||| | ||||| ||| Sbjct 2248875 CCATCTTCTCCGTAGAGGAACTGCACAATATCGCCCAAAGAGTTGCGCACAGTTCCATCG 2248934 Query 378187 TATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGA 378246 |||| | | | || ||||||| |||||| | | ||| || ||| |||||||||| | Sbjct 2248935 TATCGAGCGCTCAAGTCTTCTAGTGCTTTGACCAATCGACGTTGAATGTAACCAGTTTCA 2248994 Query 378247 CTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAAT 378306 ||| || ||||||||||| || ||||| |||||||| |||| || |||||||| || Sbjct 2248995 GCAGTCTTGACTGCAGTATCGATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAAC 2249054 Query 378307 TCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAA 378366 || | ||||| || |||| | | | || |||||| || || | || | || || Sbjct 2249055 TCTGATGGAGTGAGACCACGGAGATAAGAGTTCTCAACGAAGCCACGAGCCTCAGGAGAG 2249114 Query 378367 TCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTT 378426 | ||| | || || | || || | |||||| | || || ||| | ||||| || || Sbjct 2249115 TAATCGTCCTTAGTGAAGTGTGGGAGTGTACGGTACTTGAATCCAAAAGGAATACGCTTG 2249174 Query 378427 CCATCAACATTCTGTTGACC 378446 || || ||| |||| ||||| Sbjct 2249175 CCTTCCACAATCTGCTGACC 2249194 Score = 87.8 bits (96), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||||| || || ||||| || | ||||| ||| || || | |||||||||||| Sbjct 2248176 ATTTCTTTAAGACGAGGCACGCCGAGAGTAACGTTC---TTGGAAGACACACCAGCAAAG 2248232 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 ||||| || || | || | || || | ||||| ||||| ||||| || || | || Sbjct 2248233 TGGAACGTGTTCAATGTCATCTGGGTGGCAGGCTCTCCAATGGACTGTGCAGCCAATACA 2248292 Query 377566 CCAACCATTTCTCCAGGATTGACAATAGC 377594 |||||||| || ||||||||||| | ||| Sbjct 2248293 CCAACCATCTCACCAGGATTGACGAAAGC 2248321 >seq2 Length=4202288 Score = 122 bits (134), Expect = 3e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| ||| ||||| | | || ||||| || || || || || || ||||| || | Sbjct 1893211 TTTACTGACCGCCACGGAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGT 1893270 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || || || || || || || ||||||||||| ||||| ||||| | Sbjct 1893271 AGTCGCTCAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGT 1893330 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| |||| || ||||| || || | |||||||| Sbjct 1893331 CCGGGGGGATACCCTCCTTGTCCTGAATCTTAGACTTCACATTGTCGATGGTATCAGATG 1893390 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||| |||||||| |||| || || || || || ||||| Sbjct 1893391 ACTCCACCTCCAGAGTAATGGTCTTTCCAGTTAAGGTCTTGACGAAGATTTGCAT 1893445 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || || || || ||||| || || || || || || Sbjct 1893727 CATACCACCACGGAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1893786 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || ||||| || || ||||||||||| ||||| ||||| || || Sbjct 1893787 GGAGAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGG 1893846 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || | || || || || || | || || | || Sbjct 1893847 GGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTC 1893906 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| || | ||||| || || Sbjct 1893907 GACCTCAAGAGTGATGGTCTTGCCCGT 1893933 Score = 109 bits (120), Expect = 2e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | || || ||||| || || || || || || ||||| || | Sbjct 1893439 TTTGCATACCACCACGAAGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGT 1893498 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || || || || ||||| || || || ||||| ||||| | Sbjct 1893499 AGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGT 1893558 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || || | || ||||| || || | || || | Sbjct 1893559 CCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAGG 1893618 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| ||||| || | ||||| || || || || || || Sbjct 1893619 ACTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 1893661 >seq461 Length=561 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 ||||| || ||||| || || || || ||||| | || || || || |||||||||||| Sbjct 560 TGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGT 501 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 ||||| || ||||| | | ||||| || || || || || || || ||||| || || Sbjct 500 TTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTC 441 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || || || ||||| | || || || || || | |||| ||||| || || Sbjct 440 GCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTGTC 381 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | ||| || || ||||||||||| Sbjct 380 AATGTCTTCACGAAAATCTGCAT 358 Score = 96.9 bits (106), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||| || || || || || || || || || || Sbjct 360 CATACCACCACGGAGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTC 301 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | |||| || ||||| || |||||||| || ||||| | | || || || || Sbjct 300 GGCGAGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGG 241 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||||||||| || ||||| || || || || || || || || | || || || Sbjct 240 GGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTC 181 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || | || |||||||| | ||||| ||||| |||||||| Sbjct 180 CACCTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515244809386682