Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 286 4e-72 seq7 154 2e-32 seq12 100 3e-16 >seq4 Length=2550084 Score = 286 bits (316), Expect = 4e-72 Identities = 523/759 (69%), Gaps = 14/759 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||| | |||||||| ||||| ||| | |||||||| ||||| ||| Sbjct 816135 TCATGCGTGTCTCTGTGGGTATCTGGGGTGATGACATCGAGCGTGTCCTCGAGACCTACA 816194 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | |||| ||||| |||||| | || ||||| |||||||||||||| Sbjct 816195 ACCTCATGTCCATGAAGTTTTTTACCCACGCCTCCCCCACCCTCTTCAACGCTGGTACCC 816254 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||| || ||| | || |||||| |||| | |||||||| ||| || || || | Sbjct 816255 CTCAGCCCCAGCTATCTTCATGCTTCTTGGTTGACATGAAGGAGGACAGCATTGAGGGTA 816314 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| ||||||| ||||||||| | | ||||| |||||| || Sbjct 816315 TCTACGACACCCTCAAGACGTGTGCCATGATCTCCAAGATGGCTGGTGGCATCGGTCTCA 816374 Query 53433 ACTGCT--CGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | |||| |||| || | ||| || || || || || || | || | Sbjct 816375 ACGTCCACCGAA--TCCGCGCAACCGGTTCATACATTGCCGGTACCAATGGTACCTCCAA 816432 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||| || || ||||| || |||||||||||||| || |||||||| |||||||||| Sbjct 816433 TGGTGTCACCCCCATGCTTCGTGTCTTCAACAACACTGCTCGGTACGTGGACCAGGGTGG 816492 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | |||||||||||||| ||||| ||||||||||| | | || Sbjct 816493 CAACAAGCGACCCGGTGCTTTCGCCATCTACCTTGAGCCTTGGCACGCCGATGTCTTCGA 816552 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| ||||| || || ||| || || | |||||| | || |||||| |||| Sbjct 816553 GTTCCTCGACCTCCGCAAGAACCACGGAAAGGAAGAGGTCCGAGCCCGTGATTTGTTCCT 816612 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || || ||||| || || || |||||| | || |||||| ||| || ||| || Sbjct 816613 CGCGCTATGGATCCCTGATCTGTTCATGAAGCGTGTCGAGAAGAACGGTGACTGGACTCT 816672 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| || |||||||| ||||| | | |||||| ||||||||| | | | Sbjct 816673 CATGTGCCCCAATGAGTGCCCTGGCCTTGCCGATTGCTACGGCGAGGAGTTTGAGGCCTT 816732 Query 53791 GTATCGGACGTACGCAGTTCAGGGCCGCTACAAG----AAGAAGGTCAAGGCGCGTGAGG 53846 |||| || ||| | || | ||||| || | |||| | ||||| | || Sbjct 816733 GTATGAGAAGTATG-AG---AAGGCCGGTAAGGGTCGCAAGACCATGAAGGCCCAGAAGC 816788 Query 53847 TATGGGATGCAATCCTCAAGAGC-CAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| | || || || | ||| ||| ||||| || | || | |||| |||||| Sbjct 816789 TCTGGTACGCTATTCTTGA-AGCTCAGACTGAGACTGGTAACCCCTTCATGCTTTACAAG 816847 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 ||| | |||| |||||||||||||||||| ||||| Sbjct 816848 GATCATGCCAACCGCAAGAGCAACCAGAAGAACCTCGGC 816886 >seq7 Length=2071471 Score = 154 bits (170), Expect = 2e-32 Identities = 216/301 (72%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 117302 CGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAAT 117361 ||||| ||||| ||||||| ||| ||||| ||| |||||||||||| || | |||||| Sbjct 1458256 CGAGTAAAAATATAACGAGCGCTAGCAGCGTCCGAGCCACCAGCAAGTCGAGAACCGAAG 1458315 Query 117362 TGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG 117421 | |||||| ||||||| | ||| | |||||| | || | || ||||| |||| Sbjct 1458316 TTTCCACTTGGCTCCAGGCAGTTGATGTTGTTTGATCCGATGAAATTTTGGGCCAGTCCA 1458375 Query 117422 ACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAG 117481 ||||| || || ||| | |||||| ||||| || ||||| | || | || || Sbjct 1458376 ACAATTGTCTGCTGAAGGGACATCTCACCGTGGTGGTATGCCGTGTTTTCAGAAACATAA 1458435 Query 117482 CCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAA 117539 || |||| | | | |||||| |||| ||||| || ||| |||||| |||||| || | Sbjct 1458436 CCTGCCAATTCAACAACCTTCTTGTCTTTGACG--AGATTCCTCTTGAAGCAGGCGTATA 1458493 Query 117540 TCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGT 117599 | ||||||||||||| ||||| | ||||| || ||| || |||||| || ||| Sbjct 1458494 TAACCTTGCGCTGACCAGGCTTGAAGCCATCAATGACTGAAGGAATGGAACGCATGTTGT 1458553 Query 117600 C 117600 | Sbjct 1458554 C 1458554 Score = 105 bits (116), Expect = 7e-18 Identities = 205/303 (68%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 |||||| || || || || || | ||| || || ||| |||||| || || || | || Sbjct 1458252 CAAACGAGTAAAAATATAACGAGCGCTAGCAGCGTCCGAGCCACCAGCAAGTCGAGAACC 1458311 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 || | |||| ||||| ||| ||||| |||||| | || | |||||| || |||| Sbjct 1458312 GAAGTTTCCACTTGGCTCCAGGCAGTTGATGTTGTTTGATCCGATGAAATTTTGGGCCAG 1458371 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 ||||| || ||| || | ||||||||||| || ||||| | || | | Sbjct 1458372 TCCAACAATTGTCTGCTGAAGGGACATCTCACCGTGGTGGTATGCCGTGTTTTCAGAAAC 1458431 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 || || ||||| | | |||||| |||| | || ||| |||||| |||||||| Sbjct 1458432 ATAACCTGCCAATTCAACAACCTTCTTGTCTTTGACGAGATTCCTCTTGAAGCAGGCGTA 1458491 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGAT 152321 || ||||||||||| || || || || || | || |||||| |||||| || | Sbjct 1458492 TATAACCTTGCGCTGACCAGGCTTGAAGCCATCAATGACTGAAGGAATGGAACGCATGTT 1458551 Query 152322 GTC 152324 ||| Sbjct 1458552 GTC 1458554 >seq12 Length=1358207 Score = 100 bits (110), Expect = 3e-16 Identities = 308/467 (66%), Gaps = 31/467 (7%) Strand=Plus/Minus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| |||||||| ||||| || || ||||||||||| || | | || ||||| ||||| Sbjct 114591 ATAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTTTCCAT 114532 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGC--CATG 74576 ||||||| |||||| | | ||| | |||||| || | | || || | Sbjct 114531 AAAGTCGAAGGGGTTCGTAGACTTGTACAC---CTTCTCATTGCCGA---GGGCAACAAG 114478 Query 74577 AGG-CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAG 74635 | | ||||| || || || | ||| || ||| |||| | | | |||||||| | Sbjct 114477 AAGACGATCGGCTACGAACTCAATATATTGCTTCATGAGATCGGAGTTCATGCCGAGTAA 114418 Query 74636 TTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA-- 74693 || || || || || |||| ||| || |||| | | ||| || || | Sbjct 114417 AGCACAGGGAAGCGCTTCAGTGAGAAATTCCTTCTCGATAGTGACAGC--ATCGGTGATG 114360 Query 74694 ATCTTGTGAATGTCTT------TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GT 74746 || | ||||| ||| ||| | ||| ||| |||||||||| ||| | Sbjct 114359 ATATCCTGAATCACTTGCTTGCTGGCACGGCCCTTA------AGGTGAGAGTGGAGCAGG 114306 Query 74747 CACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAG 74806 || | | || || ||| ||| ||||| | | |||| ||| || || || | | Sbjct 114305 CAAG-CGAAGTCGGTGTGCAGGCCCTCATCACGGGAGATCAGTTCGTTTGAGAAGGTCAA 114247 Query 74807 GCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAA 74866 |||||||| || || |||||||| | ||| ||||||| | || | |||||||||||| Sbjct 114246 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAAGCAAAAGCACCACTGAAGAA 114187 Query 74867 GATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG 74913 |||||| || || |||||||| ||||||||||| ||||| |||| Sbjct 114186 GATGCCCTCTACTGCAGCAAAGGCAACAAGGCGTTGAGCGAA-GGTG 114141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212620941200