Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 257 2e-63 seq2 203 4e-47 seq5 152 6e-32 seq7 138 1e-27 seq8 123 3e-23 seq461 120 3e-22 >seq4 Length=2550084 Score = 257 bits (284), Expect = 2e-63 Identities = 963/1488 (65%), Gaps = 59/1488 (4%) Strand=Plus/Minus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGA-TACAGGTTTGTAGTGTAAGGCTCAAATGCCTC 80414 ||||| || || ||| ||||| ||| || | ||| | ||||||||||| || ||| Sbjct 817527 AACTCGCCGGCAAGGACACGACG-AGAGTAGATGTTGGATGTGTAAGGCTCGAAGCACTC 817469 Query 80415 GTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATT 80474 |||||| || |||||||||| || || || || ||||| || | | | ||| || Sbjct 817468 GTTGTTACCCAGGATCTGAGATGTACTAGCAGTAGGCATGGGTGCCAGGAGCAGACTGTT 817409 Query 80475 CCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAAT-CTGACCAAAAATCAA--CCCCAAC 80531 || | ||||||| ||||| | ||| || | || || | || | | | Sbjct 817408 GCGGATACCGTGCTCCTTGACCTGCTCTCGGAGCGGCT--CCCAGTCCCAGAGCTCGGAA 817351 Query 80532 GCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAAC 80589 | | | || |||||||||| ||| | ||| || || || || ||||| ||| ||| Sbjct 817350 GGTTTCACGTTCCACATGTCGAACTGAAGGATACCTTCAGAGGCAGGAGAGCCCTTGAAG 817291 Query 80590 GTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACG-ACTCCATAAGGGCCGCGTGATA 80648 || ||| || |||||| |||||| |||| |||| || | | | || |||||||| Sbjct 817290 GTGGAGTAGGGACCCTCCTCCTTGGCAAGCTG-CACGGACGCAGTCAAAGCAGCGTGATA 817232 Query 80649 AATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCC 80708 || |||||||| ||||||| | || |||| ||| || || | || || Sbjct 817231 GATAGTCTCAAAGATTTGTTTGTTCAGCTCACGAGCCTCAGGGGACTCAAAAGGCATGCG 817172 Query 80709 CATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTT 80768 | | ||| | ||||| || ||||| || |||| |||| || ||||||||| | Sbjct 817171 GAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCGACACCGATGGGACGGTGGCGCAT 817112 Query 80769 GTTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGT 80827 ||| | | || ||||| |||| |||||| ||| ||| |||| |||||||| Sbjct 817111 GTT-GCTGTTGCGAGCCTCAGGAACAGGGTAATGGTTGACATCAATGATCTTGTTCAGGT 817053 Query 80828 TGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCG----AATTG--GTTCC 80881 |||| ||| | | ||||| || || | || || ||||| ||| | ||| Sbjct 817052 TGCGGACGACAGTCTGGGTAACCTCGTGCAACTTTTGGAAGTCATAACAATCGTTGTTGT 816993 Query 80882 CCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCAT 80941 | || |||| || ||| ||| || || || ||||| ||||| || || |||| Sbjct 816992 AGTCAACGAATGAAGGCAGGGCCAGCGAGGCAAGGTTGCAGACGGCAACTTCATCAGGGG 816933 Query 80942 CTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCT 81001 | | | |||| |||||| ||||||| || || ||| || || ||||| |||| Sbjct 816932 CGCTGTATTCGATGATTTCAGTGCACAGGTTGGAGCTGCGAATAGTGCCGAGGTTCTTCT 816873 Query 81002 GGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCT 81061 |||| |||| |||| | |||||||| |||| | ||| |||| ||||| || Sbjct 816872 GGTTGCTCTTGCGGTTGGCATGATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCAGTCT 816813 Query 81062 GTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTT 81121 | | | || || |||| ||| | || | ||||| | |||||| || || Sbjct 816812 GAGCTTCAAGAATAGCGTACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTACCGG 816753 Query 81122 CGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTG 81181 | | ||||||| | || | || |||| | |||| || | ||| | | Sbjct 816752 CCTTCTCATACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAATCGGCAAGGCCAG 816693 Query 81182 GGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAG 81241 ||||||| || |||||||| || |||||| || ||||| ||| ||||||||| Sbjct 816692 GGCACTCATTGGGGCACATGAGAGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAACA 816633 Query 81242 CGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGT 81301 ||||||||||| || ||| ||||| || ||| || |||| || | || |||| Sbjct 816632 GATCAGGGATCCATAGCGCGAGGAACAAATCACGGGCTCGGACCTCTTCCTTTCCGTGGT 816573 Query 81302 TGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA 81361 | ||| | ||||| || || | || || || ||||| ||||| || || | ||||| Sbjct 816572 TCTTGCGGAGGTCGAGGAACTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGA 816513 Query 81362 TCG-AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATA 81415 | || | |||| ||||||||||| ||||| || ||||| ||| || | Sbjct 816512 AAGCACCGGGTCGCTTG---TTGCCACCCTGGTCCACGTACCGAGCAGTGTTGTTGAAGA 816456 Query 81416 CACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCT 81475 |||| | ||| ||| ||| ||||| || ||| || ||||| | || || || Sbjct 816455 CACGAAGCATGGGGGTGACACCATTGGAGGTACCATTGGTACCGGCAATGTATGAACCGG 816396 Query 81476 TGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGC 81533 | ||||| | | || ||| |||||||||||||| | | ||| || ||| || Sbjct 816395 TTGCGCGGATTCGGTGGACGTTG--AGACCGATGCCACCAGCCATCTTGGAGATCATGGC 816338 Query 81534 ACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAA 81593 |||| || | ||| || || || ||||| ||||| || | |||||||||| |||||| Sbjct 816337 ACACGTCTTGAGGGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATGTCAACCAAGAA 816278 Query 81594 ACAGCTTGACATCTGAGGGCTTTTTGAG-----CCGGCATTGAACAGTGTTGGGGTCGCG 81648 || || | ||| |||| |||| || || ||||| || || |||| ||| Sbjct 816277 GCATGAAGATAGCTG-GGGC----TGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCG 816223 Query 81649 TGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCA 81708 || | ||| | | ||||| |||| ||||| || ||| || || || ||| Sbjct 816222 TGGGTAAAAAACTTCATGGACATGAGGTTGTAGGTCTCGAGGACACGCTCGATGTCATCA 816163 Query 81709 CCGTGAATACCGATAGCTACACGCATAAACATGTACTG-GGGCG--------TCTCGCCT 81759 || ||||| | || |||||||| | ||||| ||| || || ||| ||| Sbjct 816162 CCCCAGATACCCACAGAGACACGCATGATCATGTGCTGTGGTCGCTCGACAATCTTGCCA 816103 Query 81760 GCGTTC------AGGTAC-ATCTTCTGCAAAGTCTTGATGCCGAAGTA 81800 || || |||||| ||| || || |||||||| ||||||||| Sbjct 816102 TCGATCTTAAGGAGGTACGATC-GCTCCAGAGTCTTGAAGCCGAAGTA 816056 >seq2 Length=4202288 Score = 203 bits (224), Expect = 4e-47 Identities = 185/231 (80%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || || ||||| |||||||| ||||| |||||| | Sbjct 1893445 ATGCAAATCTTCGTCAAGACCTTAACTGGAAAGACCATTACTCTGGAGGTGGAGTCATCT 1893386 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| ||||| |||| ||||||||||||||||| || || || |||||| Sbjct 1893385 GATACCATCGACAATGTGAAGTCTAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAG 1893326 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || |||||||||||||| |||||||| | || ||||| ||| ||||| || Sbjct 1893325 CAGCGTCTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGC-GACTACAA 1893267 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||||||||| || || || ||| | ||||| || || || || Sbjct 1893266 CATTCAGAAGGAATCCACCCTCCACCTTGTCCTCCGTCTCCGTGGCGGTCA 1893216 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || ||||||||||||||||| || | ||| | Sbjct 1893661 GTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGACACCATCGAC 1893602 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| ||||| | || || |||||||||||||| ||||| || |||||||||||||| ||| Sbjct 1893601 AATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATT 1893542 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| |||||||| | || || || | ||||| || | || |||||| Sbjct 1893541 TTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAA 1893482 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || || || ||| |||| ||||| ||||| Sbjct 1893481 TCCACCCTCCACCTTGTCCTGCGACTTCGTGGTGG 1893447 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || ||||||||||| ||||| || | ||| | || | ||| | Sbjct 1893933 ACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAGTCC 1893874 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| ||||| || |||||||||||||| || |||||||||||| Sbjct 1893873 AAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTTGCTGGTAAG 1893814 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | || ||||| | ||||| || |||| ||||| ||||| || || Sbjct 1893813 CAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 1893754 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | ||||| || ||||| Sbjct 1893753 CTGGTTCTCCGTCTCCGTGGTGG 1893731 >seq5 Length=2272025 Score = 152 bits (168), Expect = 6e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || |||||||| ||||| Sbjct 1174878 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 1174819 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || |||||||||||||| || || || |||||| Sbjct 1174818 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1174759 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||||||||| |||||||| | || ||||| ||| ||||| || Sbjct 1174758 CAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGC-GACTACAA 1174700 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| || || | ||| | || || || ||||| Sbjct 1174699 CATCCAGAAGGAGAGCACCCTCCACTTGGTCCTCCGCCTGCGTGGTGG 1174652 >seq7 Length=2071471 Score = 138 bits (152), Expect = 1e-27 Identities = 220/313 (70%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GTC 32042 || ||| |||||||| ||||||||||| |||||||||||| |||||| ||| || ||| Sbjct 1458524 GATGGCTTCAAGCCTGGTCAGCGCAAGGTTATATACGCCTGCTTCAAGAGGAATCTCGTC 1458465 Query 32043 GAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102 | |||| |||||| | | || | || || || | || | ||||| || ||||| Sbjct 1458464 AAA-GACAAGAAGGTTGTTGAATTGGCAGGTTATGTTTCTGAAAACACGGCATACCACCA 1458406 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 ||| ||| ||| || ||| || ||||| || || || || || |||| |||| Sbjct 1458405 CGGTGAGATGTCCCTTCAGCAGACAATTGTTGGACTGGCCCAAAATTTCATCGGATCAAA 1458346 Query 32163 TAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 ||| | |||| || |||||| |||| | || || | || || || |||||| ||| Sbjct 1458345 CAACATCAACTGCCTGGAGCCAAGTGGAAACTTCGGTTCTCGACTTGCTGGTGGCTCGGA 1458286 Query 32223 TGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGA 32282 ||||| ||| | ||||| || || || ||| | |||| | | |||||||||||| Sbjct 1458285 CGCTGCTAGCGCTCGTTATATTTTTACTCGTTTGTCACCATTTGCACGCAAGATTTTCTC 1458226 Query 32283 CCCGTCGGACGAT 32295 || | ||||||| Sbjct 1458225 TCCCTTGGACGAT 1458213 >seq8 Length=1962940 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || |||||||| ||||| || | ||| Sbjct 146363 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATC 146422 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| || Sbjct 146423 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 146482 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || || ||||| || ||||||| || ||||| | ||||| || |||| ||| Sbjct 146483 ATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 146542 Query 27595 G 27595 | Sbjct 146543 G 146543 >seq461 Length=561 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | ||||| || || || || | ||||| ||| || | Sbjct 130 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCTTGGAGGTGGAG--AGCT 187 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||| | || ||||||| || || ||||||||||| |||||||| ||||||| Sbjct 188 CCGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACC 247 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 | ||| | | || || || || || || || || || | | ||||| || ||||| | Sbjct 248 AACAGAGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCAGAACCCTCGCCGACTACA 307 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| |||||||| || || ||| | ||| | ||||| || ||||| Sbjct 308 ACATCCAGAAGGAATCAACCCTCCATTTGGTCCTCCGTCTCCGTGGTGG 356 Score = 107 bits (118), Expect = 2e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | || || ||||| |||||| | ||||| ||| || | Sbjct 358 ATGCAGATTTTCGTGAAGACATTGACAGGGAAGACGATTACTTTGGAGGTGGAG--AGCT 415 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||||| || ||||||| || || |||||||||||||| || || ||||||| Sbjct 416 CCGACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCACCAGACC 475 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | | || || || || || ||||| || || | || || | || || || | Sbjct 476 AGCAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGCCGGACTTTGGCGGATTACA 535 Query 27584 ATGTCCAAAAGGAATCCACTCTTCA 27608 | |||| ||||| || || ||||| Sbjct 536 ACATCCAGAAGGAGTCGACGCTTCA 560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306878333280