Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq461 132 3e-26
seq2 95.1 8e-15
seq5 91.5 9e-14
>seq461
Length=561
Score = 132 bits (146), Expect = 3e-26
Identities = 163/220 (74%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||||||||| || ||||| || ||||| || || | || ||||
Sbjct 347 AGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTG 288
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| || ||||| ||||| || || || | ||||||||| || || | ||| |||
Sbjct 287 CCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGAATTCCTTCC 228
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | || ||||| ||||||||| |||| |||
Sbjct 227 TTGTCCTGGATC-TTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGT 169
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| ||||| ||||| || ||||||||||| |||||||||
Sbjct 168 GATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCATG 129
Score = 116 bits (128), Expect = 2e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || ||||| ||||| | | || || |||||||||||||||| ||||| ||
Sbjct 549 CTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGTTTTCCGGCGAA 490
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| || | ||| ||||| || || | ||||||||||| |||| || | || |||
Sbjct 489 GATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATC-TTCGCCTTCACGT 431
Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
| ||| ||||| ||||||||| |||| || ||||| || || || || || ||||
Sbjct 430 TGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTGTCAATGTCTTCA 371
Query 34694 CAAAAATCTGCAT 34706
| |||||||||||
Sbjct 370 CGAAAATCTGCAT 358
>seq2
Length=4202288
Score = 95.1 bits (104), Expect = 8e-15
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||| ||||| ||| |||||| || ||||| || || || || |||||
Sbjct 1893740 AGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGG 1893799
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| || ||||| ||||| || | |||||| |||||||| || | ||||||
Sbjct 1893800 CCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCC 1893859
Query 34609 TTGTC 34613
|||||
Sbjct 1893860 TTGTC 1893864
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| |||| || | ||||| ||| ||||| |||||||| || || ||
Sbjct 1893447 CCACCACGAAGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAC 1893506
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || || || || ||||| || || | |||||| |||||||| ||
Sbjct 1893507 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGA 1893566
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||||| ||||||
Sbjct 1893567 ATGCCCTCCTTGTCCTGGATCTT 1893589
>seq5
Length=2272025
Score = 91.5 bits (100), Expect = 9e-14
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||| ||||||||||| || ||||| || || || || || |||| ||
Sbjct 1174670 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCG 1174729
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
|| || ||||| ||||| || | ||||| |||||||| || | ||||||||||| |
Sbjct 1174730 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 1174789
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||| || | || || | || ||||| |||||| || | ||| ||||| ||
Sbjct 1174790 ATC-TTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 1174848
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || | || || || || |||||||| |||
Sbjct 1174849 CCCCGTGAGGGTCTTGACGAAGATCTGCATCTTG 1174882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314727705131102
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |