Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq8 87.8 2e-12 >seq8 Length=1962940 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 6548 TCGATGTGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAA 6605 |||| ||||| ||||||| ||| ||||| |||| |||| | ||| || |||| Sbjct 1138401 TCGACGTGGTCGAGGTAGACATGAGCATCGCCCATGACGTGAGTTAG-GCTTCCT-GGAA 1138458 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 | | | | ||| ||||| ||||||| ||| |||| ||||| || ||||||||||| | Sbjct 1138459 CTAGCTCGCAGACGTGAGCAATCATGTGCGTCAGCAATGCGTAGCTCGCAATGTTGAATG 1138518 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 | || || | ||||| || | ||||| ||||||||||| ||| Sbjct 1138519 GAACACCGAGTCCCATATCGCAGGATCGCTGATAGAGCTGACAG 1138562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||| ||||||||||| ||||| | || ||||| | || || || ||||||||||| || Sbjct 1138562 CTGTCAGCTCTATCAGCGATCCTGCGATATGGGACTCGGTGTTCCATTCAACATTGCGAG 1138503 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 ||||| |||| ||| ||||||| ||||| ||| | | | ||||| || ||| Sbjct 1138502 CTACGCATTGCTGACGCACATGATTGCTCACGTCTGCGAGCTAGTTCC-AGGAAGC-CTA 1138445 Query 34756 GCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 | |||| |||| ||||| ||| ||||||| ||||| |||| Sbjct 1138444 ACTCACGTCATGGGCGATGCTCATGTCTACCTCGACCACGTCGA 1138401 Score = 82.4 bits (90), Expect = 7e-11 Identities = 185/273 (68%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 ||||||| || || || ||||| | || || ||||||||||||| || | || Sbjct 1138648 TGTGGCAAGGCGGAAGGACCATCTTGCGAAGGTCGGCCGGGTTCCACGCGGTCAGGATGA 1138707 Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGT-GTCGATCACGTACTGCA-GCTGGTCCGC 6864 | | ||| | ||||||| | ||| | || |||| | | ||| ||||||| | Sbjct 1138708 GACGACGGTCGTAAGGGTTC-GTGCGAAGCTTGTGAATCAGCT-CAGCAAGCTGGTCGAC 1138765 Query 6865 TCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTG 6924 |||||| || | ||||| | | | | |||||| || |||||||||| |||||| Sbjct 1138766 TCCCTGGCCGGTGTAGTCAGTCTTGTAGTCGACATACTCGGCGCCAAAGTGTCGCCACTG 1138825 Query 6925 GAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAG 6984 ||| ||||| || ||||| | ||||||||||| || | | || | |||||||| Sbjct 1138826 GAAGCCGTAAACGGGGCCAAGATCGCCCTCCTCACGGTGAGTTAGACCAAGGTTGTCCAG 1138885 Query 6985 AAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || || || || || | | ||||||||||| Sbjct 1138886 GAATTCGCGTGAGCCATTTCCATCCCAGATCTT 1138918 Score = 82.4 bits (90), Expect = 7e-11 Identities = 185/273 (68%), Gaps = 4/273 (1%) Strand=Plus/Minus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 ||||||||||| | | || || || || || |||||||| | || | | || Sbjct 1138918 AAGATCTGGGATGGAAATGGCTCACGCGAATTCCTGGACAACCTTGGTCTAACTCACCGT 1138859 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 ||||||||||| | ||||| || ||||| ||||||||| |||||||||| || |||||| Sbjct 1138858 GAGGAGGGCGATCTTGGCCCCGTTTACGGCTTCCAGTGGCGACACTTTGGCGCCGAGTAT 1138799 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGC-TGCAGTACGTGATCGA 34506 | | | | ||||| | || ||||||| ||||||| ||| | | |||| | Sbjct 1138798 GTCGACTACAAGACTGACTACACCGGCCAGGGAGTCGACCAGCTTGCTG-AGCTGATTCA 1138740 Query 34507 C-ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 | | ||| | ||||||| | ||| | | || | || ||||||||||||| | Sbjct 1138739 CAAGCTTCGCAC-GAACCCTTACGACCGTCGTCTCATCCTGACCGCGTGGAACCCGGCCG 1138681 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598 | || | ||||| || || || ||||||| Sbjct 1138680 ACCTTCGCAAGATGGTCCTTCCGCCTTGCCACA 1138648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259631979680