Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq461 89.7 3e-13
seq5 86.0 4e-12
>seq461
Length=561
Score = 89.7 bits (98), Expect = 3e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || | || || || ||||| ||| | || || || | |
Sbjct 358 ATGCAGATTTTCGTGAAGACATTGACAGGGAAGACGATTACTTTGGAGGTGGAGAGCTCC 417
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || || || ||||| || || | || ||||| ||
Sbjct 418 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCACCAGACCAG 477
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || || ||||| |||||||| ||||||| || ||||| | |||||||||
Sbjct 478 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGCCGGACTTTGGCGGATTACAAC 537
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 538 ATCCAGAAGGAGTCGAC 554
>seq5
Length=2272025
Score = 86.0 bits (94), Expect = 4e-12
Identities = 138/196 (70%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| || ||||||||||| || |||||||| || || || || ||
Sbjct 1174881 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1174822
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || || ||||| || || | || || ||
Sbjct 1174821 TCCGACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 1174763
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| ||||| | || ||||| || || || || || |||| ||||| | |||| ||
Sbjct 1174762 CCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTA 1174703
Query 23787 CAACATACAAAAAGAG 23802
|||||| || || |||
Sbjct 1174702 CAACATCCAGAAGGAG 1174687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338007564970952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |