Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq461 127 5e-24 seq5 107 4e-18 seq2 104 5e-17 seq8 102 2e-16 >seq461 Length=561 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| || ||||| || |||||||||||||| || ||||| | || ||||| || | Sbjct 560 TGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGGCCGTCTTCAAGTTGT 501 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | |||||||||||| | | ||| || ||||| || || || || Sbjct 500 TTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTC 441 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || | || | | |||| || ||||| || || | |||||| || || || || Sbjct 440 GCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCTGTC 381 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | ||||||||||| | |||||| Sbjct 380 AATGTCTTCACGAAAATCTGCAT 358 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | ||| || || || || || ||||||||||| ||||| | ||||| Sbjct 348 GAGACGGAGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCT 289 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || |||||||| ||| ||||||||||| | ||||| ||||| | | |||||||| Sbjct 288 GCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGAATTCCTTC 229 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || || || | || | | |||| || ||||| || || | || Sbjct 228 CTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGT 169 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || | || ||||| |||| |||||| Sbjct 168 GATGGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 130 >seq5 Length=2272025 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | || || || ||| || ||||||||||| ||| | || | || || Sbjct 1174666 GAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTC 1174725 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || |||||||| | ||||||||||| | ||| || ||||| || Sbjct 1174726 CTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 1174785 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | | |||| ||| ||| || ||||| || || || Sbjct 1174786 CTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 1174845 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || |||||||| ||||| ||||||| |||||| || || Sbjct 1174846 CTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTGCC 1174884 >seq2 Length=4202288 Score = 104 bits (114), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| |||||||| || || || || || || || |||||||| |||| | ||| | Sbjct 1893456 AGTCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGG 1893515 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 || || || || ||||| |||||||| || || | ||||||||||| | || || | Sbjct 1893516 CCGTCCTCGAGCTGCTTT--CCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCT 1893573 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || || || || || ||| | || | | |||| || ||| || ||||||| Sbjct 1893574 CCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCAAGAG 1893633 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | || || ||||| ||||| ||||| |||| Sbjct 1893634 TGATGGTCTTGCCAGTGAGGGTCTTGACGA 1893663 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || || || || ||||| || ||||||||||| |||| | |||| Sbjct 1893739 GAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCG 1893798 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || || || |||||||| | ||||||||||| | || || || Sbjct 1893799 GCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTC 1893858 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || ||||| | || | | |||| || ||| || |||||||| Sbjct 1893859 CTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGT 1893918 Query 152066 AATAGTTTTGCCCGTGA 152082 || || |||||||||| Sbjct 1893919 GATGGTCTTGCCCGTGA 1893935 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| || || || || || || || |||||||| ||| | || | Sbjct 1893227 GAGACGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCG 1893286 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || || || |||||||| | ||||||||||| | ||| || || Sbjct 1893287 GCCGTCCTCGAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTC 1893346 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || ||| | || | | | || || ||| || || ||||| Sbjct 1893347 CTTGTCCTGAATCTTAGACTTCACATTGTCGATGGTATCAGATGACTCCACCTCCAGAGT 1893406 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || | ||||| ||||||| ||||| Sbjct 1893407 AATGGTCTTTCCAGTTAAGGTCTTGACGAAGATTTGCAT 1893445 >seq8 Length=1962940 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | || | ||||| || || || ||||||||||| Sbjct 146541 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 146482 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||||| | || || ||||| || || || || |||||| | || Sbjct 146481 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 146422 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | | |||| || ||| || ||||| || || || ||||||||||| ||||||||||| Sbjct 146421 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 146363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153813497035474