Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016- 11-16] 494 sequences; 63,692,547 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq461 178 3e-39 seq5 141 2e-28 seq2 141 2e-28 seq8 140 8e-28 >seq461 Length=561 Score = 178 bits (196), Expect = 3e-39 Identities = 160/201 (80%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | || |||||||| |||||| | |||||||| ||||| ||| Sbjct 133 CAGATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCTTGGAGGTGGAGAGCTCCGAC 192 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| |||||||| |||||||| || || ||||| || Sbjct 193 ACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAACAG 252 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||||||||| ||||| || || || || ||||| || ||| || Sbjct 253 AGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCAGAACCCTCGCCGACTACAACATC 312 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || |||||||| || ||| Sbjct 313 CAGAAGGAATCAACCCTCCAT 333 Score = 149 bits (164), Expect = 2e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | ||||| || ||||| || | |||||||| ||||| ||| Sbjct 361 CAGATTTTCGTGAAGACATTGACAGGGAAGACGATTACTTTGGAGGTGGAGAGCTCCGAC 420 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| |||||||| || || ||||| || |||||||| Sbjct 421 ACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCACCAGACCAGCAG 480 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||||||||| || ||||| || ||||| | || ||||| ||| || Sbjct 481 AGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGCCGGACTTTGGCGGATTACAACATC 540 Query 178104 CAAAAAGAATCAACACTGCA 178123 || || || || || || || Sbjct 541 CAGAAGGAGTCGACGCTTCA 560 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 178020 GAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGA 178079 ||||| ||||| || || |||||| || | |||||||||||||||||||| ||||| || Sbjct 1 GAAGGTATCCCCCCAGATCAGCAAAGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGC 60 Query 178080 AGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 | || || ||||| || ||| ||||||| || ||||| || ||| Sbjct 61 CGTACCCTCGCCGACTACAACATCCAAAAGGAGTCAACCCTCCAT 105 >seq5 Length=2272025 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 1174875 CAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 1174816 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 1174815 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 1174756 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || |||||||| || || | || || ||| || ||| || Sbjct 1174755 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTACAACATC 1174696 Query 178104 CAAAAAGA 178111 || || || Sbjct 1174695 CAGAAGGA 1174688 >seq2 Length=4202288 Score = 141 bits (156), Expect = 2e-28 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || ||||| || ||||| || ||| |||||||||| Sbjct 1893663 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGACACCATCG 1893604 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || || ||||| |||||||| || || || || ||||||||||| || || | Sbjct 1893603 ACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGA 1893544 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | ||||||||||| |||||||| || || | ||||| |||| || ||| | || || | Sbjct 1893543 TTTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATTCAGAAGG 1893484 Query 178111 AATCAACACTGCATCTTGTTTTGAGACT 178138 |||| || || || ||||| || |||| Sbjct 1893483 AATCCACCCTCCACCTTGTCCTGCGACT 1893456 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || ||||| || || || || |||||||| || || Sbjct 1893442 CAAATCTTCGTCAAGACCTTAACTGGAAAGACCATTACTCTGGAGGTGGAGTCATCTGAT 1893383 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||||||||||| || || ||||| ||||||||||| Sbjct 1893382 ACCATCGACAATGTGAAGTCTAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 1893323 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || |||||||| || || | || || ||| || ||| | Sbjct 1893322 CGTCTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTACAACATT 1893263 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || || ||||| Sbjct 1893262 CAGAAGGAATCCACCCTCCACCTTGT 1893237 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||| || ||||| || ||| ||||||||||| |||||||| Sbjct 1893935 TCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAGT 1893876 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||||| || || || || ||||||||||| || |||||||| || || | Sbjct 1893875 CCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTTGCTGGTA 1893816 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || || || | || || |||| || ||| |||| || || || || || | Sbjct 1893815 AGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCC 1893756 Query 178123 ATCTTGTT 178130 | || ||| Sbjct 1893755 ACCTGGTT 1893748 >seq8 Length=1962940 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || ||||| || || || |||||||| ||||| || ||| |||||||| Sbjct 146362 TTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCAT 146421 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || || || ||||||||||| || || Sbjct 146422 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 146481 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || ||||| || ||||| | || || |||| || ||| |||| || Sbjct 146482 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 146541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723581133836