Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calonectria_20pseudoreteaudii_20[genbank_20GCA_5F001879505.1_202016-
11-16] 494 sequences; 63,692,547 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq461 178 3e-39
seq5 141 2e-28
seq2 141 2e-28
seq8 140 8e-28
>seq461
Length=561
Score = 178 bits (196), Expect = 3e-39
Identities = 160/201 (80%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | || |||||||| |||||| | |||||||| ||||| |||
Sbjct 133 CAGATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCTTGGAGGTGGAGAGCTCCGAC 192
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| || ||||| |||||||| |||||||| || || ||||| ||
Sbjct 193 ACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAACAG 252
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||||||||||||||| ||||| || || || || ||||| || ||| ||
Sbjct 253 AGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCAGAACCCTCGCCGACTACAACATC 312
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| || |||||||| || |||
Sbjct 313 CAGAAGGAATCAACCCTCCAT 333
Score = 149 bits (164), Expect = 2e-30
Identities = 153/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || | ||||| || ||||| || | |||||||| ||||| |||
Sbjct 361 CAGATTTTCGTGAAGACATTGACAGGGAAGACGATTACTTTGGAGGTGGAGAGCTCCGAC 420
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || ||||| |||||||| || || ||||| || ||||||||
Sbjct 421 ACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCACCAGACCAGCAG 480
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | ||||||||||||||||| || ||||| || ||||| | || ||||| ||| ||
Sbjct 481 AGGTTGATCTTCGCCGGAAAACAACTTGAAGACGGCCGGACTTTGGCGGATTACAACATC 540
Query 178104 CAAAAAGAATCAACACTGCA 178123
|| || || || || || ||
Sbjct 541 CAGAAGGAGTCGACGCTTCA 560
Score = 95.1 bits (104), Expect = 3e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 178020 GAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGA 178079
||||| ||||| || || |||||| || | |||||||||||||||||||| ||||| ||
Sbjct 1 GAAGGTATCCCCCCAGATCAGCAAAGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGC 60
Query 178080 AGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
| || || ||||| || ||| ||||||| || ||||| || |||
Sbjct 61 CGTACCCTCGCCGACTACAACATCCAAAAGGAGTCAACCCTCCAT 105
>seq5
Length=2272025
Score = 141 bits (156), Expect = 2e-28
Identities = 144/188 (77%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 1174875 CAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 1174816
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || ||||| |||||||||||
Sbjct 1174815 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 1174756
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||| || || || |||||||| || || | || || ||| || ||| ||
Sbjct 1174755 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTACAACATC 1174696
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 1174695 CAGAAGGA 1174688
>seq2
Length=4202288
Score = 141 bits (156), Expect = 2e-28
Identities = 156/208 (75%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| || || || ||||| || ||||| || ||| ||||||||||
Sbjct 1893663 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGACACCATCG 1893604
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || || || ||||| |||||||| || || || || ||||||||||| || || |
Sbjct 1893603 ACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGA 1893544
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
| ||||||||||| |||||||| || || | ||||| |||| || ||| | || || |
Sbjct 1893543 TTTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATTCAGAAGG 1893484
Query 178111 AATCAACACTGCATCTTGTTTTGAGACT 178138
|||| || || || ||||| || ||||
Sbjct 1893483 AATCCACCCTCCACCTTGTCCTGCGACT 1893456
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || | || ||||| || || || || |||||||| || ||
Sbjct 1893442 CAAATCTTCGTCAAGACCTTAACTGGAAAGACCATTACTCTGGAGGTGGAGTCATCTGAT 1893383
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || |||||||||||||| || || ||||| |||||||||||
Sbjct 1893382 ACCATCGACAATGTGAAGTCTAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 1893323
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||| || || || |||||||| || || | || || ||| || ||| |
Sbjct 1893322 CGTCTTATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGAGCGACTACAACATT 1893263
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || || || |||||
Sbjct 1893262 CAGAAGGAATCCACCCTCCACCTTGT 1893237
Score = 127 bits (140), Expect = 5e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || ||||| || ||||| || ||| ||||||||||| ||||||||
Sbjct 1893935 TCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAGT 1893876
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
|||||||||||||| || || || || ||||||||||| || |||||||| || || |
Sbjct 1893875 CCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTTGCTGGTA 1893816
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| || || || | || || |||| || ||| |||| || || || || || |
Sbjct 1893815 AGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCC 1893756
Query 178123 ATCTTGTT 178130
| || |||
Sbjct 1893755 ACCTGGTT 1893748
>seq8
Length=1962940
Score = 140 bits (154), Expect = 8e-28
Identities = 139/180 (77%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || ||||| || || || |||||||| ||||| || ||| ||||||||
Sbjct 146362 TTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCAT 146421
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || || || ||||||||||| || ||
Sbjct 146422 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 146481
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || ||||| || ||||| | || || |||| || ||| |||| ||
Sbjct 146482 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 146541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203723581133836
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |