Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq76 280 2e-70 seq101 118 1e-21 >seq76 Length=131010 Score = 280 bits (310), Expect = 2e-70 Identities = 1321/2064 (64%), Gaps = 47/2064 (2%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||||||||| || || || | | ||||| |||||||||||||| || || ||| Sbjct 90098 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 90157 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTA-GTTTGGAATAACTCGGATCTGCTAT 52926 || | |||| || ||||||||||| || | || || | || || | || Sbjct 90158 CCCAACTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 90216 Query 52927 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 52986 ||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 90217 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 90276 Query 52987 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 53046 ||| || ||||| || ||||||| || || |||| ||| ||||| |||| | Sbjct 90277 GATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 90336 Query 53047 GTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 ||||| ||| || || ||||||||||| | || || | ||||| || | || Sbjct 90337 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 90396 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||| | | | ||| | | | | || || || || || ||||| |||||||| Sbjct 90397 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 90456 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 || | || | |||| ||| || || |||||| || || | |||| || ||| Sbjct 90457 AGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAATCC 90516 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 | ||||||| || || || |||||||| || || | ||||| || | | ||| Sbjct 90517 AAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACC 90576 Query 53284 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 53342 || | ||| | | || | || | |||||| ||||||||| | ||| || Sbjct 90577 GTGTTGAGCGATCTGTTGCTTCA-AGCTAGCCCAATCCCAAAGATCGGTAGGTGTGACAC 90635 Query 53343 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 53402 ||| || || ||| ||| ||| ||| |||||| || |||| Sbjct 90636 CCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATATGTCTCATATG 90695 Query 53403 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 53462 | || | ||| || | || || || ||| ||| |||||||| |||| Sbjct 90696 GACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGA 90755 Query 53463 AGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG-AAT 53520 | || | | || || | |||| || || | ||||| ||| | ||||| | Sbjct 90756 AAATTTGAATGTTAAGGTGCTTG-GCCTCTGGAGACTCAAAAGGA-AGACGAAGAGCCAA 90813 Query 53521 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 53580 || || || || | ||||||||||| | | | |||||||| || | ||| | | Sbjct 90814 GAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCTCT 90872 Query 53581 TTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAA 53639 ||| || || |||| || || || || | ||| ||||| || || | ||| |||| | Sbjct 90873 TTCTTGCCTCAGGAACTGGGTAGTAGTTGACATCGATAATCTTGTTCAAGTTCTTGACGA 90932 Query 53640 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATTGTC---CATCTATTACAAAC 53695 |||| | || || | || || | |||||| || || | | ||| | | | Sbjct 90933 CAACTTGGCAGACCTCGTGAAGCTTCTGGAAATCATAAGTGGCAGTCTTCTCGTCGACAT 90992 Query 53696 ATGTT--CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TAT 53752 ||||| | |||| || |||| ||| ||| || ||||||| | | | || || Sbjct 90993 ATGTTGGGAGAGCAAGCGACGCCAAATTGCAACAAGCGACCTCATCTG-GTGCACAGTAC 91051 Query 53753 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 53812 | | ||||||||||| | || | |||||| || | ||| | ||| || ||| Sbjct 91052 TCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTC 91111 Query 53813 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCT 53872 ||| ||| || |||||||| ||||| ||||| || | || || ||| | || | || Sbjct 91112 TTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCA 91171 Query 53873 ATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTT 53929 | ||| | | ||| | | || || || | ||| | ||| || Sbjct 91172 AGAATAGAGTACCAAAGCTTTTGGGCTTTGATGCT---CTTGCGACCCTTGCCCTCAGAC 91228 Query 53930 TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACAT 53989 |||||| |||||| ||| |||||||| || | |||| | |||| |||||||| Sbjct 91229 TCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACAC 91288 Query 53990 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 54049 || | || |||||||| | ||| || || | | || || ||||| |||||||| Sbjct 91289 TCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCT 91348 Query 54050 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 54109 |||||||| ||||| ||| ||||| | || | | ||||| ||||| |||||| Sbjct 91349 GGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTT 91408 Query 54110 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACT 54169 || ||||||||| | | || ||| | ||||| || || | ||| |||| | | | Sbjct 91409 CGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCA 91468 Query 54170 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 54229 ||||| || ||||| || || ||||| | ||||| |||||||| ||| ||||||| | | Sbjct 91469 CCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTAAAAACTCTGAGC 91528 Query 54230 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 54289 || |||| || || ||||| || ||||| |||| ||||| ||| | ||||| Sbjct 91529 ATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAGTAGCACGG 91588 Query 54290 ATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 54347 || | || ||| ||||| || || || || | || || || | || || | Sbjct 91589 ATTCTGTGAACGTTG--AGACCGATACCACCAGCGTTCTTTGAAATCATAGCACAAATCT 91646 Query 54348 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 54407 | || || || || || || || || || || ||| |||||| | || || ||| | Sbjct 91647 TCAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATCAGGAAGCAGGATG 91706 Query 54408 ACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 | | || ||| | | || || || || | ||| || || ||||| || || || Sbjct 91707 AAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAAAGGGTGGGGGAGGCGTGGGTGAAGTAT 91765 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCC 54525 || || | | ||||| |||||||| || | || |||||| || | || ||||| Sbjct 91766 TTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGTATTCC 91824 Query 54526 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAG 54585 || || |||||||| | ||| || || || | || ||||||| | | || Sbjct 91825 CACCGCAACACGCATAATCATATGTTGTGGACGCTCGCAGATCTTGCCATCGAGACGGAG 91884 Query 54586 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCG 54643 | || ||| || | || || ||||| || || | ||| ||||| || || ||| Sbjct 91885 GAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCACGGTCG 91942 Query 54644 TAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACA-TC-CATGGTAATAC 54701 || | ||| | |||||||| | ||| | || | || ||| || ||| | | | Sbjct 91943 TAGACAATGGCAGAGTTGAGCTCGGCCTCGTGCTTCATGAC-ACAGTCGTATGTT--TGC 91999 Query 54702 TTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTC 54760 ||| || || || || |||| ||| |||||||||||||| | |||| || Sbjct 92000 TTGCTGATCATGGGTGACAATTTCTTGTTTCGAGGATTGACATAGTGATATAATTCGGAA 92059 Query 54761 ATCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 54819 || || | | | ||| | || || |||| |||||| || || || || || ||||| || Sbjct 92060 ATGAC-GCTCGAGAATTGCTTCTTGGTTTGTTTGTGGAGGTTCGAAACTGCAATTCTTGC 92118 Query 54820 GGCTAGAATGGCATAATCCGGATG 54843 || || ||||||||||| || || Sbjct 92119 TGCGAGGATGGCATAATCGGGGTG 92142 >seq101 Length=586485 Score = 118 bits (130), Expect = 1e-21 Identities = 336/513 (65%), Gaps = 5/513 (1%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 |||||||| ||| | ||||| ||||| || || || || || || | | || || || Sbjct 138414 TTTTGGTAATCAGCGACACGCTTTTCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 138355 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAA-AT 23962 ||||| || ||| |||| |||||||| || || | ||| | | | || | | | | Sbjct 138354 TCCATAAAGTCGAATGGGTTGGTAACCTTGTAAAC-CTTCTCATTGCCGAGGGAAAGGAG 138296 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 | | ||| ||||| ||||| || ||| ||||||| | ||||| || | ||| Sbjct 138295 GAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAG 138236 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 138235 AGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGAC 138176 Query 24083 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 24142 | |||| | | | || || ||| | || || || | | |||||||| Sbjct 138175 GGCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAA 138116 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 || ||| ||||||||||| | || || |||||||| || || || || | ||| Sbjct 138115 GTCAGTGTGCAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCAT 138056 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 24262 ||||||||||| || | ||| || ||||| || || || ||| ||||| || || || Sbjct 138055 GAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTC 137996 Query 24263 TACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGTATCCACTT 24319 || || || ||||||| ||| | || || | || | |||| || ||||| Sbjct 137995 AACAGCGGCGAAGGCAACAAGACGTTGGGCAAAGGTGGACTCCTTGTCTTGGATCCATCG 137936 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 |||||| ||||||||||| || | ||||| Sbjct 137935 GACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 137903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717674015920