Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq400 104 2e-17 >seq400 Length=416305 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| |||| ||| || ||||| || ||||| ||||||| Sbjct 399554 CCACCACGGAGTCGGAGAACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAA 399495 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| || || || || ||| | ||||| | || |||||| || Sbjct 399494 AGAGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGTGGG 399435 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || || | | ||| |||||| | |||| Sbjct 399434 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTATCCGATGACTCCACC 399375 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 || | ||| |||||||||||||| || || ||||||| Sbjct 399374 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACAA 399338 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | || ||||||||||| || || ||||| | || |||| || | ||| Sbjct 399767 AGGACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCC 399708 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| || ||||| || |||| |||| ||| ||||| || | || ||||| || Sbjct 399707 TCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCC 399648 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||||| | ||| |||||| | |||| || | || |||||| Sbjct 399647 TGAATCTTCGACTTCACATTATCGATAGTATCCGATGACTCCACCTCGAGAGTGATGGTC 399588 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| | || ||||| || |||||||| Sbjct 399587 TTCCCGGTGAGGGTCTTGACGAAGATTTGCAT 399556 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||||||| ||||||||| ||||||||||||||| || || Sbjct 400011 TCCTCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCT 399952 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || | | ||||||| || ||||| || |||| | || ||| || || || Sbjct 399951 GAGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGG 399892 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || ||||| || ||||||| || || | | | || || | |||| Sbjct 399891 AATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGACTCCAC 399832 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||||| |||||||| || || || |||||||| || ||||| Sbjct 399831 TTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422256477615764