Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq400 84.2 2e-11 >seq400 Length=416305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || ||||||||||| || ||||| ||| ||| | || Sbjct 399784 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACTATTACATTGGAAGTGGAGTCTTCA 399843 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| ||| || ||||| || ||| | || ||||||| Sbjct 399844 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 399903 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 || || | || || || ||||| |||||||| ||| || | ||| | |||||||| Sbjct 399904 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACACTCAG--CGATTACA 399961 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | ||||||||||| ||| | ||| ||||| | || | || ||||| Sbjct 399962 ACATTCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGAGG 400010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410794151516006