Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq101 154 2e-32 seq224 114 1e-20 seq400 96.9 4e-15 >seq101 Length=586485 Score = 154 bits (170), Expect = 2e-32 Identities = 268/387 (69%), Gaps = 2/387 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| |||| |||||||||| ||||| | || |||||| | || ||| || || Sbjct 137903 CCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCCGATGGATCCAAGACAAGGAGTCCACC 137962 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 || | | | || || || |||||||| || || ||||| ||||||| ||| |||| Sbjct 137963 TTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTC 138022 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 ||| |||| || ||| | ||||| || ||||||||| | || || || ||| ||||||| Sbjct 138023 GCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAG 138082 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | |||||| | |||||||||||||| ||||| || || | || ||| || ||| Sbjct 138083 TTGATCTCCCGTGACGAGGGTCTGCACACTGACTTCGCATGCCTTCTCTTCTCCCACTTG 138142 Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268 ||| || || ||| ||| ||| || || ||||||| || || | || ||| Sbjct 138143 AAGCATCGCCCAAGCAAGGCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATTGAG 138202 Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGAT 117327 || ||| | || || || || || |||| ||| || || | || | | ||| Sbjct 138203 CAAGAGTTCTTGACTGAGGCTCTTCCTTGTGC-TCTTCTCGGCATGAACGCCAACTTGAT 138261 Query 117328 GTCGCAATACATCGAGTTCGTCGCCGA 117354 | ||||||||| ||||||||||| || Sbjct 138262 GAAGCAATACATTGAGTTCGTCGCTGA 138288 >seq224 Length=493007 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||||||||| ||||||||| |||| ||||| | | |||| | | | |||| Sbjct 271720 TCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGAGTGACACGATCGATAATGTCAAAT 271661 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | ||||| ||||| |||||| | || || ||||| || |||| ||| |||| Sbjct 271660 CCAAGATCCAGGACAAGGAGGGAATCCCCCCTGATCAACAACGCCTAATCTTCGCCGGCA 271601 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | || || || |||| || |||||| ||||||||||||||||||||| | || || | Sbjct 271600 AGCAACTCGAAGACGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTC 271541 Query 40892 ATCTAGTGTTGCG 40904 |||| || || || Sbjct 271540 ATCTCGTCTTACG 271528 >seq400 Length=416305 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| ||||||||| |||| || || | | || | | | |||| ||||| Sbjct 399352 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCGGATACTATCGACAACG-TCAAGTC 399410 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| ||||||||||| ||||||| ||||| || |||| || || || Sbjct 399411 GAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAACAACGTCTTATCTTTGCTGGTAA 399470 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || |||| ||||| || |||||||||||||||||||| | || ||||| Sbjct 399471 GCAACTTGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAATCTACTCTGCA 399530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215793113040