Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq400 95.1 1e-14 seq486 82.4 7e-11 >seq400 Length=416305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || ||||||||||| || ||| || ||||||| Sbjct 399251 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCCTCG 399192 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| | ||| || ||||| ||||| || ||||||||||| Sbjct 399191 AGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCCTCCTTGTCCTGG 399132 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | || || Sbjct 399131 ATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTA 399072 Query 118710 CCGGT 118714 ||||| Sbjct 399071 CCGGT 399067 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || || || |||||||| || | |||||| ||||| Sbjct 399536 ACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCA 399477 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || ||||| |||| ||||| || || || || || |||||||||||||| | Sbjct 399476 AGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGA 399417 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || |||| ||| ||||||| ||| | || ||| Sbjct 399416 ATCTTCGACTTGACGTTGTCGATAGTATCCGATGACTCCACCTCGAGGGTGATGGTCTTG 399357 Query 118710 CCGGTCAGAGTTTTTACAA 118728 ||||||| || || |||| Sbjct 399356 CCGGTCAAGGTCTTGACAA 399338 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||| |||||||||||||||||||| | || || |||||| Sbjct 399993 CACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGACCATCCTC 399934 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | || || || ||| | || | ||||| ||||| || || || |||||||| || Sbjct 399933 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTG 399874 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | || | ||||| | ||| || || | || | || || Sbjct 399873 GATCTTTGACTTGACATTATCAATTGTGTCTGAAGACTCCACTTCCAATGTAATAGTCTT 399814 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || ||||| |||||||| Sbjct 399813 GCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784 >seq486 Length=791322 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 ||||| ||||||||||| | |||||| ||||||||| || ||||||||| |||| Sbjct 144944 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 145003 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 | ||| || || || || || |||||||||||||| Sbjct 145004 AAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTC 145038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827603014068