Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq400 113 5e-20 >seq400 Length=416305 Score = 113 bits (124), Expect = 5e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011 |||||||||| | | ||| | |||||| ||||| ||||||||||||||||| ||||||| Sbjct 400015 ATTGTCCTCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAAT 399956 Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 | || || || | || || | ||||| || ||||| || | |||||| || || | Sbjct 399955 CGCTGAGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTG 399896 Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATT 43131 || | | |||||| ||| ||| ||| |||| | | | ||||| || | Sbjct 399895 GTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGACT 399836 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || | || || || |||||||| | ||||| |||||||| ||||| Sbjct 399835 CCACTTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784 Score = 82.4 bits (90), Expect = 9e-11 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| || ||||| || || ||||| || | ||||| || |||| || Sbjct 399536 ACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCA 399477 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||||||||| || || || || || ||||| | || | || |||||||||| || Sbjct 399476 AGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCC-TG 399418 Query 43095 ATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 | | || | |||| ||| | | | || || || ||||| |||| |||||||| | Sbjct 399417 AATCTTCGACTTGA-CGTTGTCGATAGTATCCGATGACTCCACCTCGAGGGTGATGGTCT 399359 Query 43153 TGCCCGTTAGCGTCTTTACAA 43173 |||| || | ||||| |||| Sbjct 399358 TGCCGGTCAAGGTCTTGACAA 399338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813818856120